View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_low_12 (Length: 533)

Name: NF7489_low_12
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_low_12
NF7489_low_12
[»] chr5 (14 HSPs)
chr5 (1-514)||(6731506-6732023)
chr5 (1-241)||(6716373-6716613)
chr5 (1-134)||(6773814-6773947)
chr5 (1-81)||(6738915-6738995)
chr5 (1-81)||(6748967-6749047)
chr5 (1-258)||(7096767-7097024)
chr5 (1-85)||(6724290-6724374)
chr5 (348-464)||(7095671-7095787)
chr5 (405-464)||(6749593-6749652)
chr5 (61-308)||(6761852-6762091)
chr5 (385-515)||(6725410-6725540)
chr5 (385-466)||(6740511-6740592)
chr5 (300-348)||(6724617-6724665)
chr5 (106-154)||(6749072-6749120)
[»] chr8 (2 HSPs)
chr8 (42-84)||(33912557-33912599)
chr8 (126-154)||(33974374-33974402)


Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 6731506 - 6732023
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6731506 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagattaataatattggatatatactaattttcc 6731605  T
Q  101 aaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcacttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6731606 aaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgtacttcaa 6731705  T
Q  201 attgggagttcttgagacggcaacaacgaagatgtttccacgaaatttggctagtcaagacnnnnnnnngctttctaaatcaatgagaatga-----att 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||     |||    
T  6731706 attgggagttcttgagacggtaacaacgaagatgtttccacgaaatttggctagtcaagac-aaaaaaagctttctaaatcaatgagaatgaattgtatt 6731804  T
Q  296 gtattgaaatgaactaaaattgtttggataatttttatgattgaattccaaataccttggatttgtggatcccaagaaaggttcatttgaagagtgggtt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6731805 gtattgaaatgaactaaaattgtttggataatttttatgattgaattccaaataccttggatttgtggatcccaagaaaggttcatttgaagagtgggtt 6731904  T
Q  396 taacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccggtaaattc 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6731905 taacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccagtaaattc 6732004  T
Q  496 aggaacttgaggagcacca 514  Q
    |||||||||||||||||||    
T  6732005 aggaacttgaggagcacca 6732023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6716373 - 6716613
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattttcc 100  Q
    ||||||||||||| ||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | || || ||    
T  6716373 ttataatctggcatttggaatttgaacctctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatttctcccaacttgcc 6716472  T
Q  101 aaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcacttcaa 200  Q
      |  |||||||||||   |||||| || ||||||||| ||||||||||||||| || ||| |||||| |  | || || ||||||||||||  ||||||    
T  6716473 tcagcagaagtcccaaccggttaatggcgtcttcatcagtttgaaactcaggcacccgaagcccacagtgttcgaatagcgtttgtacaatgttcttcaa 6716572  T
Q  201 attgggagttcttgagacggcaacaacgaagatgtttccac 241  Q
     ||||||||| ||||||||| ||||| ||||||||||||||    
T  6716573 gttgggagtttttgagacggtaacaaagaagatgtttccac 6716613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 6773814 - 6773947
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattttcc 100  Q
    |||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||    
T  6773814 ttataatctggcaatttgaatttgaacttctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatatctaccaacttgcc 6773913  T
Q  101 aaaatagaagtcccaattcgttaattgcatcttc 134  Q
      |  |||| |||||||  |||||||||||||||    
T  6773914 tcagcagaattcccaatcggttaattgcatcttc 6773947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6738915 - 6738995
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 81  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738915 ttataatctggcaatttgaatgtgaacttctcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 6738995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6748967 - 6749047
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 81  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6748967 ttataatctggcaattggaatttgaacttctcaacaaggttttctgagccaggccaaacatcatccaagactaataatatt 6749047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 7097024 - 7096767
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattttcc 100  Q
    |||||||||| || ||||||| |||| || |||||||||| |||||||  |||||||||||||||||||||||||| |||||||| | ||| || || ||    
T  7097024 ttataatctgacatttggaatttgaaattctcaacaaggccttctgagttaggccaaacatcatccaagactaatagtattggatttctaccaacttgcc 7096925  T
Q  101 aaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcacttcaa 200  Q
      || || |||||||||  ||||||||||||||||||  |||||||||| || | || |  ||||||| |  |||| ||||  || ||||||  ||||||    
T  7096924 tcaacagtagtcccaatcggttaattgcatcttcatcggtttgaaactcgggaacccgacatccacagtgttcaaatagtgcctgcacaatgttcttcaa 7096825  T
Q  201 attgggagttcttgagacggcaacaacgaagatgtttccacgaaatttggctagtcaa 258  Q
     ||||||||| |||||| ||  |||| |||||||||| ||| ||| ||| ||| ||||    
T  7096824 gttgggagtttttgagatggtgacaaagaagatgttttcaccaaacttgcctattcaa 7096767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6724290 - 6724374
Alignment:
Q  1 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 85  Q
    ||||||||||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724290 ttataatctggcaatttaaatttgaacttctccacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 6724374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 464
Target Start/End: Complemental strand, 7095787 - 7095671
Alignment:
Q  348 taccttggatttgtggatcccaagaaaggttcatttgaagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgag 447  Q
    |||||| ||||||||| |||||| | || ||| |   |||||||| |||| ||||  |||||||||||||||||| || ||||||||||||||  || |     
T  7095787 tacctttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcat 7095688  T
Q  448 caactcaatcttcaact 464  Q
    ||| |||||||||||||    
T  7095687 caattcaatcttcaact 7095671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 464
Target Start/End: Original strand, 6749593 - 6749652
Alignment:
Q  405 cacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaact 464  Q
    |||||||||||||||||| ||  ||||||||||||| ||| | |||||||||||||||||    
T  6749593 cacccaaaccagtcaaaaaaagtacagaaacaccatccttcatcaactcaatcttcaact 6749652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 6761852 - 6762091
Alignment:
Q  61 tcatccaagactaataatattggatatatactaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaa 160  Q
    |||||||||| ||||||||||||| ||   | ||||| || ||||||||||||||||  || |||||||||||| |   |||||||||| |||| |||||    
T  6761852 tcatccaagagtaataatattggaaat---ccaatttccctaaatagaagtcccaatatgtcaattgcatcttcgt---tttgaaactccggcacccaaa 6761945  T
Q  161 gtccacagcgag-caaacagtgtttgtacaatgcacttcaaattgggagttcttgagacggcaacaacgaagatgtttccacgaaatttggctagtcaag 259  Q
     ||||||  ||| |||  | ||| |||||||||  |||||| |||||||||||||||| |   |||  ||||||||||| || ||| ||| ||||||||     
T  6761946 atccaca-tgagtcaattattgtctgtacaatgttcttcaagttgggagttcttgagaggcggacatagaagatgtttctaccaaacttgcctagtcaaa 6762044  T
Q  260 acnnnnnnnngctttctaaatcaatgagaatgaattgtattgaaatgaa 308  Q
    ||        |||||||||||||| ||||| | ||| ||||||||||||    
T  6762045 ac--aaaatagctttctaaatcaaggagaaaggattttattgaaatgaa 6762091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 515
Target Start/End: Original strand, 6725410 - 6725540
Alignment:
Q  385 aagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagcctt 484  Q
    |||||||| |||| ||||  |||||||||||||||||| || ||||||| |||||| ||| | ||| |||| |||||||||| | ||  | | || | ||    
T  6725410 aagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaagcaccatccttcatcaattcaaccttcaactcattaaattgcttaaccatt 6725509  T
Q  485 ccggtaaattcaggaacttgaggagcaccat 515  Q
    ||  ||||||||||  |||||||||||||||    
T  6725510 ccaataaattcaggctcttgaggagcaccat 6725540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 6740511 - 6740592
Alignment:
Q  385 aagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactca 466  Q
    |||||||| |||| ||||  |||||||||||||||||| || ||||||| |||||| ||| | ||| |||| ||||||||||    
T  6740511 aagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaagcaccatccttcatcaattcaaccttcaactca 6740592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 6724617 - 6724665
Alignment:
Q  300 tgaaatgaactaaaattgtttggataatttttatgattgaattccaaat 348  Q
    ||||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  6724617 tgaaatgaaataaaattgtatggatattttttatgattgaatgccaaat 6724665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 6749072 - 6749120
Alignment:
Q  106 agaagtcccaattcgttaattgcatcttcatcactttgaaactcaggca 154  Q
    ||| ||||||||| ||||||||||||||| | ||||||||| |||||||    
T  6749072 agatgtcccaattggttaattgcatcttcgttactttgaaaatcaggca 6749120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 33912599 - 33912557
Alignment:
Q  42 ttctgagccaggccaaacatcatccaagactaataatattgga 84  Q
    ||||||||| |||||||||||||||| |||||| |||||||||    
T  33912599 ttctgagccgggccaaacatcatccaggactaacaatattgga 33912557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 33974402 - 33974374
Alignment:
Q  126 tgcatcttcatcactttgaaactcaggca 154  Q
    |||||||||||||||||||||||||||||    
T  33974402 tgcatcttcatcactttgaaactcaggca 33974374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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