View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_13 (Length: 526)
Name: NF7489_low_13
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 456
Target Start/End: Original strand, 40208402 - 40208850
Alignment:
| Q |
9 |
gaagaatatagtgtaccaagttggtttaaacatttcacctggttcatcttgtcattgtacagaaccaggttggtttcgtgtgtgtttcgcaaacatgtca |
108 |
Q |
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| T |
40208402 |
gaagaaaatagtgtaccaagttggtttaaacatttcacctggttcatcttgtcattgtacagaaccaggttggtttcgtgtgtgtttcgcaaacatgtca |
40208501 |
T |
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| Q |
109 |
gaagagactttgaaactagcaatgaaaaggttgaaagctttcgttgttgagtccaccggcaatgttaatggtgttacaacaaaaagcacaaagagaaatt |
208 |
Q |
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| T |
40208502 |
gaagagactttgaaactagcaatgaaaaggttgaaagctttcgttgttgagtccactggcaatgttaatggtgttacaacaaaaagcacaaagagaaatt |
40208601 |
T |
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| Q |
209 |
tactcactaagtgggtttttcggttatcgtctcgtgatcaacgtgatcaacaagaggaacggtaacttggtggtgattggtgatgatcgtannnnnnnnn |
308 |
Q |
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| T |
40208602 |
tactcactaagtgggtttttcggttatcgtctcgtgatcaacgtgatcaacaagaggaacggtaacttggtggtgattggtgatgatcgtagtgtgtgtg |
40208701 |
T |
|
| Q |
309 |
nnnnnnaagtgctgaagtttgaagaaactagccatgcacaatattacacnnnnnnnnnnnnnnnnnnnnnnnngcactccccagttatttcttggaggag |
408 |
Q |
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| T |
40208702 |
tgtgtgaagtgctgaagtttgaagaaactagccatgcacaatattacacttttatttttatttttttctttttgcactccccagttatttcttggaggag |
40208801 |
T |
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| Q |
409 |
tagttcaaaaaatgttatttactatata-ttttttcgtgattaaattgt |
456 |
Q |
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| T |
40208802 |
tagttcaaaaaatgttatttactatatatttttttcgtgattaaattgt |
40208850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 40208870 - 40208908
Alignment:
| Q |
472 |
aagcactctgcccatgtggatgtgaagtgtgagaatatt |
510 |
Q |
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| T |
40208870 |
aagcactctgcccatgtggatgtgaagtgtgagaatatt |
40208908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 5134116 - 5134013
Alignment:
| Q |
37 |
aacatttcacctggttcatcttgtcattgtacagaaccaggttggtttcgtgtgtgtttcgcaaacatgtcagaagagactttgaaactagcaatgaaaa |
136 |
Q |
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||||||||||||||| | || |||||||| || ||||| || ||||||||||| ||||| || |||||||||||||| || || || |||| ||||||| |
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| T |
5134116 |
aacatttcacctggtgcttcatgtcattgcaccgaacctgggtggtttcgtgtttgttttgctaacatgtcagaagatacattaaacttagctatgaaaa |
5134017 |
T |
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| Q |
137 |
ggtt |
140 |
Q |
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|||| |
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| T |
5134016 |
ggtt |
5134013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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