View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_14 (Length: 523)
Name: NF7489_low_14
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 26609426 - 26609248
Alignment:
| Q |
1 |
gaatggaatgaaatggaacctactcacattatatattgtttggatttttgactaatggattatggaacaccattcacattccattgtttggctagtagac |
100 |
Q |
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| T |
26609426 |
gaatggaatgaaatggaacctactcacattatatattgtttggatttttgactaatggattatggaacaccattcacattccattgtttggctagtagac |
26609327 |
T |
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| Q |
101 |
aaaatagaatgcattataatttttattcaatttttacgtttatattttaaaaacatcatgcacaaataaattatttggt |
179 |
Q |
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| T |
26609326 |
aaaatagaatgcattataatttttattcaatttttacgtttatattttaaaaacatcatgcacaaataaattatttggt |
26609248 |
T |
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Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 296 - 499
Target Start/End: Complemental strand, 26609237 - 26609037
Alignment:
| Q |
296 |
aaactaagacttttaagtttgtctattttgcataaccaaattctataaaatataccgatggatgannnnnnnnnnngttttgttgagggataccgatcga |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
26609237 |
aaactaagacttttaagtttgtctattttgcataaccaaattctataaaatataccgatggatgatttttttt---gttttgttgtgggataccgatcga |
26609141 |
T |
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| Q |
396 |
tgataaattgataatgtgccacatttacaaattcctatactttataaaaataaaataaaatccttctttctgtcccgaatactatagacctaccgataat |
495 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
26609140 |
tgataaattgataatgtgccacatttgcaaattcctatactttataaaaataaaataaaatccttctttttgtcccgaatactagagacccaccgataat |
26609041 |
T |
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| Q |
496 |
tgaa |
499 |
Q |
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|||| |
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| T |
26609040 |
tgaa |
26609037 |
T |
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