View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_15 (Length: 515)
Name: NF7489_low_15
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Original strand, 38737203 - 38737716
Alignment:
| Q |
9 |
gaagaatatgaggaaaatggaaataatgaaagagactcatcttccggtgatgaggggggtacagaactccgacagagaaaacgaaagagatggaccagag |
108 |
Q |
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| T |
38737203 |
gaagaaaatgaggaaaatggaaataatgaaagagactcatcttccggtgatgaggggggtacagaactccgacagagaaaacgaaagagatggaccagag |
38737302 |
T |
|
| Q |
109 |
ttcgctcctctcagccctcatcgtcaatggcaagtcctgatggtggaagtatagaaagtgatctggatataaatagagaaaatcgaggaacttctaggct |
208 |
Q |
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| T |
38737303 |
ttcgctcctctcagccctcatcgtcaatggcaagtcctgatggtggaagcatagaaagtgatctggatataaatagagaaaatcgaggaacttctaggct |
38737402 |
T |
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| Q |
209 |
ggtgacaaaagctagaaagcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtggtggtagcaacggcaagagttcccgtagt |
308 |
Q |
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| T |
38737403 |
ggtgacaaaagctagaaagcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtggtggtagcaacggcaagagttcccgtagt |
38737502 |
T |
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| Q |
309 |
ggtcgaatgtctaggttggttgattatctcaaaaacttgaatgagaacactgatgaggtataagttc---------nnnnnnnnctctctctcttgtaat |
399 |
Q |
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| T |
38737503 |
ggtcgaatgtctaggttggttgattatctcaaaaacttgaatgagaacactgatgaggtataagttctttttttttttttttctctctctctcttgtaat |
38737602 |
T |
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| Q |
400 |
ggaccaatgaaaaatgatactacgtattgcttctttattatacttgtattcttatttcagttcaatttaacaaatagataccgtcttttatttacagttt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38737603 |
ggaccaatgaaaaatgatactacgtattgcttctttattatacttgtattcttatttcagttcaatttaacaaatagatactgtcttttatttacagttt |
38737702 |
T |
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| Q |
500 |
gatgtccatctcat |
513 |
Q |
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| T |
38737703 |
gatgttcatctcat |
38737716 |
T |
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