View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_16 (Length: 512)
Name: NF7489_low_16
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Original strand, 53672299 - 53672775
Alignment:
| Q |
15 |
ggacatcatacccaaaaatcatagagtaatcatccaattcatcagaagtgaactttgggattctccaactctttccaacttcatagtcttgtccattggt |
114 |
Q |
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| T |
53672299 |
ggacatcatacccaaaaatcatagagtaatcatccaattcatcagaagtgaactttgggattctccaactctttccaacttcatagtcttgtccattggt |
53672398 |
T |
|
| Q |
115 |
tagcagctctaacacctgtgtataatcaaaaagaagaaaacacaagaaaattttagtgaagtgtgatcttgttgagacacaaataaaccttaaggtctgt |
214 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53672399 |
tagcagctctaacacctgtgtataatcaaaatgaagaaaacacatgaaaattttagtgaagtgtgatcttgttaagacacaaataaaccttaaggtctgt |
53672498 |
T |
|
| Q |
215 |
ttggtgtttgaaaaaatgttttctatttttatttcgataattaaaatgaaaatagaaaacgttttctcaaaccaaacagaaccactaaacatgaaaacat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53672499 |
ttggtgtttgaaaaaatgttttctatttttatttcgataattaaaatgaaaatagaaaacgttttctcaaaccaaacagaaccactaaacatgaaaacat |
53672598 |
T |
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| Q |
315 |
attggttgttatttgttagttcacctcggtcattgccggacgccaaatggcagtttgtctaacacaatatgaagctgttaggactaccctatacagttgc |
414 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53672599 |
atcggttgttatttgttagttcacctcggtcattgcgggacgccaaatggcagtttgtctaacacaatatgaagctgttaggactaccctatacagttgc |
53672698 |
T |
|
| Q |
415 |
tctacatcatatctaccttccattcttggatctgccagctcagcaatattccctgattccatcagaggcttagcctg |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53672699 |
tctacatcatatctaccttccattcttggatctgccagctcagcaatattccctgattccatcagaggcttagcctg |
53672775 |
T |
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