View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_17 (Length: 458)
Name: NF7489_low_17
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_17 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 25196613 - 25196861
Alignment:
| Q |
1 |
aagatcttgggagaataaaatagaaggagatggggtaatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtg |
100 |
Q |
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| T |
25196613 |
aagatcttgggagactaaaatagaaggagatggggtgatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtg |
25196712 |
T |
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| Q |
101 |
tgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctccaagataaatcttggaattccaggctata |
200 |
Q |
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| T |
25196713 |
tgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctccaagataaatcttggaattccaggctata |
25196812 |
T |
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| Q |
201 |
ggtatgcatgaccattgaaatatttatattctcgtgagttgtaagcgat |
249 |
Q |
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| T |
25196813 |
ggtatgcatgattattgaaatatttatattctcgtgagttgtaagcgat |
25196861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 344 - 440
Target Start/End: Original strand, 25196927 - 25197023
Alignment:
| Q |
344 |
acaatttgctatttgttgttagtaatggtactaatgtggaaaatggtatcataatcttatttaggtacttgccaaacaagagaaatatagaaatatg |
440 |
Q |
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| T |
25196927 |
acaatttgctatttgttgttagtaatggtactaatgtgggaaatggtatcataatcttatttaggtacttgccaaacaagagaaatatacaaatatg |
25197023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 1762077 - 1762191
Alignment:
| Q |
39 |
tttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatatt |
138 |
Q |
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| T |
1762077 |
tttcagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaatttt |
1762176 |
T |
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| Q |
139 |
cgcaaagcttagaga |
153 |
Q |
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| T |
1762177 |
ttcaaagcttagaga |
1762191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19207052 - 19207271
Alignment:
| Q |
1 |
aagatcttgggagaataaaatagaaggagatggggtaatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtg |
100 |
Q |
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| T |
19207052 |
aagatcttgggagagtagaatagaaagagatggagtagtttcagagattaaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagtt |
19207151 |
T |
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| Q |
101 |
tgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctccaagataaatcttggaattccaggctata |
200 |
Q |
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| T |
19207152 |
agttttgggagcaattatgtcgaaggaaaagaaatattcacaaagcttagagatcttataaaactcctctccaagatatatgttggaattccgggcttta |
19207251 |
T |
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| Q |
201 |
ggtatgcatgaccattgaaa |
220 |
Q |
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| T |
19207252 |
ggtatgcatgatcattgaaa |
19207271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9378 - 9593
Alignment:
| Q |
1 |
aagatcttgggagaataaaatagaaggagatggggtaatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtg |
100 |
Q |
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|||||||||||||| || ||| ||| | ||||| ||| |||||||||| | | |||| |||||| ||||||||||||| |||||||||||||||||||| |
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| T |
9378 |
aagatcttgggagagtagaattgaaagtgatggagtagtttcagagataaaaattgacgaagatctgcgaagcttgtcagctgacataattgctagagtt |
9477 |
T |
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| Q |
101 |
tgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctccaagataaatcttggaattccaggctata |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| || |||||||||| || | || |
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| T |
9478 |
tgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagggatcttctaaaactcctctccaagatatatgttggaattcctggtttta |
9577 |
T |
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| Q |
201 |
ggtatgcatgaccatt |
216 |
Q |
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||||| ||||| |||| |
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| T |
9578 |
ggtattcatgatcatt |
9593 |
T |
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