View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7489_low_18 (Length: 452)
Name: NF7489_low_18
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 15263233 - 15262806
Alignment:
| Q |
19 |
caacatatgtgccattatggaagaagatcagagaatgaacataataaacataatctttctatggaaatatttgattaataaattaacaagctaagaggaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
15263233 |
caacatatgtgccattatggaagaagatcagagaatgaacataataaacataatctttctatggaaagattagattaataaattaacaagctaagaggaa |
15263134 |
T |
|
| Q |
119 |
tgaatgtctcactcttcactccttggttgtcccttccaatcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaac |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15263133 |
tgaatgtctcactcttcactccttggttgtcccttccaatcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtccaggcaaac |
15263034 |
T |
|
| Q |
219 |
accaatgaacacaatcattttgcacatactttggaacaccgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15263033 |
accaatgaacacaatcattttgcacatactttggaacaccgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgc |
15262934 |
T |
|
| Q |
319 |
caattcagttgcatccaatacctcaaatctaatccctccaaatgcatttgattttttcttagcattttccacttcttcaatctcaatccttctaatctca |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15262933 |
caattcagttacatccaatacctcaaatctaatccctccaaatgcatttgattttttcttagcattttccacttcttcaatctcaatccttctaatctca |
15262834 |
T |
|
| Q |
419 |
ctttccatttttccaattttcttctcac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
15262833 |
ctttccatttttccaattttcttctcac |
15262806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 158 - 444
Target Start/End: Original strand, 15287332 - 15287618
Alignment:
| Q |
158 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
257 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |
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|
| T |
15287332 |
tcccacctcttcatcatctctacaaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactc |
15287431 |
T |
|
| Q |
258 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattcagttgcatccaatacctcaaatctaatccctcc |
357 |
Q |
| |
|
| || || || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||| |||||| ||| | |
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|
| T |
15287432 |
catttgcaaatggaaaaggattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagttacatccaacacctcaattctaataccttc |
15287531 |
T |
|
| Q |
358 |
aaatgcatttgattttttcttagcattttccacttcttcaatctcaatccttctaatctcactttccatttttccaattttcttctc |
444 |
Q |
| |
|
|||| ||| | |||| |||| ||| ||||||||||||| |||||||||||||||||||||| |||||| ||||| | ||||||| |
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|
| T |
15287532 |
aaatttattagcttttgtcttggcactttccacttcttctatctcaatccttctaatctcaccatccattcctccaactatcttctc |
15287618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 15284578 - 15284418
Alignment:
| Q |
163 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
262 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || || |
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|
| T |
15284578 |
cttcttcatcatctccaacaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccattt |
15284479 |
T |
|
| Q |
263 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
323 |
Q |
| |
|
|| || |||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
15284478 |
gcaaatggaaaaggattcatataagcaccagcatgaccatctggtctcaacaatgccaatt |
15284418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 158 - 427
Target Start/End: Original strand, 15256661 - 15256930
Alignment:
| Q |
158 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
257 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||| | |||||||| |
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|
| T |
15256661 |
tcccatttcttcataatctccagaaaaatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaacac |
15256760 |
T |
|
| Q |
258 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattcagttgcatccaatacctcaaatctaatccctcc |
357 |
Q |
| |
|
| || || || |||||||| | ||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| | | ||||||| |||| |||||| |
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|
| T |
15256761 |
cattggcaaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaagtgcctcaaacctaacccctcc |
15256860 |
T |
|
| Q |
358 |
aaatgcatttgattttttcttagcattttccacttcttcaatctcaatccttctaatctcactttccatt |
427 |
Q |
| |
|
|||| || | ||| |||||||| ||| |||||||||| |||||| | || |||||||| |||||| |
|
|
| T |
15256861 |
aaattcactacctttcaccttagcatcttcaacttcttcaacctcaattttcctcatctcactatccatt |
15256930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 158 - 366
Target Start/End: Original strand, 15265186 - 15265394
Alignment:
| Q |
158 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
257 |
Q |
| |
|
||||| ||||| || || |||| ||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||| | | |||| | |
|
|
| T |
15265186 |
tcccatttctttataatttctaaaaatatctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaaccc |
15265285 |
T |
|
| Q |
258 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattcagttgcatccaatacctcaaatctaatccctcc |
357 |
Q |
| |
|
| || ||| |||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||| ||| |||||||||| |||||||| | || ||| |
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|
| T |
15265286 |
cattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatcttaaccttcc |
15265385 |
T |
|
| Q |
358 |
aaatgcatt |
366 |
Q |
| |
|
|||| |||| |
|
|
| T |
15265386 |
aaattcatt |
15265394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 51383763 - 51383603
Alignment:
| Q |
163 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
262 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
51383763 |
cttcttcatgatctccaaaaaaatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccatta |
51383664 |
T |
|
| Q |
263 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
323 |
Q |
| |
|
|| || ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
51383663 |
gcaaatggaaaaggattcatgtaggctcctgcatgaccatctggtctcaacaatgccaatt |
51383603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 321
Target Start/End: Original strand, 44247983 - 44248140
Alignment:
| Q |
164 |
ttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttcg |
263 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| | || | |
|
|
| T |
44247983 |
ttcttcatcatctgcaaaaaaatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttag |
44248082 |
T |
|
| Q |
264 |
cgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaa |
321 |
Q |
| |
|
| || |||||||||||||| ||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
44248083 |
caaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaa |
44248140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 11806900 - 11807060
Alignment:
| Q |
163 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
262 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||| |||| |||||||| || |
|
|
| T |
11806900 |
cttcttcatcatctccaaaaaaatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgtttta |
11806999 |
T |
|
| Q |
263 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
323 |
Q |
| |
|
|| || |||||||||| | | ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
11807000 |
gcaaatggaaaaggatacctataagctcctgcatgaccatctggtctcaacaatgccaatt |
11807060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 48391719 - 48391667
Alignment:
| Q |
188 |
tcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttg |
240 |
Q |
| |
|
|||||||||| ||| || |||||||||||| ||||||| | |||||||||||| |
|
|
| T |
48391719 |
tcattccaagaatcgattggtcctggcaaataccaatgtaaacaatcattttg |
48391667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
| Q |
192 |
tccaagtatctataggtcctggcaaacaccaatgaacacaatcatt |
237 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6554179 |
tccatgtatctataggccctggcaaacaccaatgaacacaatcatt |
6554224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 6543659 - 6543709
Alignment:
| Q |
187 |
ctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcatt |
237 |
Q |
| |
|
||||||||| ||||| | |||||| || ||||||||||||||||||||||| |
|
|
| T |
6543659 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
6543709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 4835980 - 4836038
Alignment:
| Q |
179 |
agaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcatt |
237 |
Q |
| |
|
|||||||||||||| |||||| | ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4835980 |
agaaaaatctcattaatagtatcaacaggccctggcatacaccaatgaacacaatcatt |
4836038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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