View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_19 (Length: 449)
Name: NF7489_low_19
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 38090712 - 38090365
Alignment:
| Q |
16 |
attctctgtagagtagaatgaaattgacacatctagtctttagcaattgccacttgc----------tagctctcatataatagtaccattttccttaca |
105 |
Q |
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| T |
38090712 |
attctctgtagagtagaatgaaattgacacatctagtctttagcaattgccacttgcaagctcttgctagctctcatataatagtaccattttccttacc |
38090613 |
T |
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| Q |
106 |
ctaattttatatttaat---gttaatgtttaccctggacctaacgctgtaagaaaattcgttacatgaatattatgaattactagctagtagttaagaag |
202 |
Q |
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| T |
38090612 |
ctaattttatatttaataatgttaatgtttaccctggacctaacgttgtaagaaaattcgttacatgaatattatgaattactagctagtagttaagaag |
38090513 |
T |
|
| Q |
203 |
tatacatatgatagatacaaagttaccatctcatctcattcataacataactaaccaaaatttaaaatgtcacgccattgtacaaatttgtttcttaatt |
302 |
Q |
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| T |
38090512 |
tatacatatgatagatacaaagttaccatctcatctcattcataacataactaaccaaaatttaaaatgtcacgccattgtacaaatttgtttcttaatt |
38090413 |
T |
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| Q |
303 |
acttaaacatgcaatatcctctgcttagtgaatgatactagaaatgca |
350 |
Q |
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| T |
38090412 |
acttaaacatgcaatatcctctgcttagtgaatgatactagaaatgca |
38090365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 38090332 - 38090256
Alignment:
| Q |
348 |
gcacttgatatttctaagtgtgaattttttcaggtgattatttatttatagtgtgaaatgtgaaattcgattatataaact |
428 |
Q |
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| T |
38090332 |
gcacttgatatttctaagtgtgaattttttcgggtgattat----ttatagtgtgaaatgtgaaattcgattatataaact |
38090256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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