View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7489_low_2 (Length: 785)
Name: NF7489_low_2
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 9 - 761
Target Start/End: Original strand, 45293018 - 45293754
Alignment:
| Q |
9 |
gaagaatataaagggacatgatcataaaaggatgcctctattgcagtttgctgagtttggattgcagaaagttgggtttagattcatgatgggaggtggt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293018 |
gaagaaaataaagggacatgatcataaaaggatgcctctattgcagtttgctgagtttggattgcagaaagttgggtttagattcatgatgggaggtggt |
45293117 |
T |
|
| Q |
109 |
aataatgagcaatcaatggatagtacttctgaggctaacaattcagatagcagtgagtgtgaagtggaagttgttagtttggtaatctcttattctcctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45293118 |
aataatgagcaatcaatggatagtacttctgaggctaacaattcagatagcagtgagtgtgaagtggaagttgttagtttggtaatctcttattatcctt |
45293217 |
T |
|
| Q |
209 |
aactctttatgtaaa-ttataggcaaaatacatcttgcggtatttcaagttatttaattatatcaaattagtcttaaagttttattgtgcctcacataga |
307 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45293218 |
aattctgtatgtaaatttataggcaaaatacatcttgcggtatttcaagttatttaattatatcaaatttgtcttaaagttttattgtgcctcacataga |
45293317 |
T |
|
| Q |
308 |
gcatttaagttccatttggtgtacagtgtcacaannnnnnnacacatcatgtagaagatgggaaaatggtacatgtcagataagtggcgaaccccgttta |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45293318 |
gcatttaagttccatttggtgtacattgtcacaatttttttacacatcatgtagaagatgggaaaatggtacatgtcggataagtggcgaaccccgttta |
45293417 |
T |
|
| Q |
408 |
taccacataaataacataacagataaggcaaattctatgataaatgtgtatatttgtaacgtaatgtgtaaaaaagggtaacattgtacacgtaatggga |
507 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293418 |
taccacataagtaacataaca-----------------gataaatgtgtatatttgtaacgtaatgtgtaaaaaagggtaacattgtacacgtaatggga |
45293500 |
T |
|
| Q |
508 |
cttataggacttatgtgaaacaaaaaagactaatctagtactagtttgcccaaactattcttttcttccaaaaatgtgttctcttgtgatatcacataca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293501 |
cttataggacttatgtgaaacaaaaaagactaatctagtactagtttgcccaaactattcttttcttccaaaaatgtgttctcttgtgatatcacataca |
45293600 |
T |
|
| Q |
608 |
tttatttcactgatagaaacaaaaaggaatatcataatattacttaatagttattaacttcattgatagcagcagtattgctggaagtattatgttagga |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45293601 |
tttatttcactgatagaaacaaaaaggaatatcataatattacttaatagttattaacttcattgatagcagcagtattactggaagtattatgttagga |
45293700 |
T |
|
| Q |
708 |
tgtagaataatagatattagagtagttaaagtagttagagaagttagtttgtta |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293701 |
tgtagaataatagatattagagtagttaaagtagttagagaagttagtttgtta |
45293754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 769
Target Start/End: Complemental strand, 13819092 - 13819030
Alignment:
| Q |
710 |
tagaataatagatattagagtagttaaagtagttagagaagttag---tttgttatttggatt |
769 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
13819092 |
tagaatattagatgttagagaagttaaagtagttagcgaagttagttttttgttatttggatt |
13819030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 700 - 745
Target Start/End: Original strand, 16514962 - 16515007
Alignment:
| Q |
700 |
tgttaggatgtagaataatagatattagagtagttaaagtagttag |
745 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16514962 |
tgttaggatatagaataattgatattagagtagttaaagtagttag |
16515007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 744
Target Start/End: Original strand, 35188995 - 35189041
Alignment:
| Q |
698 |
tatgttaggatgtagaataatagatattagagtagttaaagtagtta |
744 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
35188995 |
tatgttaggatatagaataatatatattgaagtagttaaagtagtta |
35189041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 769
Target Start/End: Complemental strand, 25957631 - 25957584
Alignment:
| Q |
723 |
attagagtagtta-aagtagttagagaagttagtttgttatttggatt |
769 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
25957631 |
attaaagtagttacaagttgttagagaagttagtttgttatttggatt |
25957584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 743
Target Start/End: Original strand, 39718900 - 39718942
Alignment:
| Q |
701 |
gttaggatgtagaataatagatattagagtagttaaagtagtt |
743 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
39718900 |
gttaggatatagaataatagacattagagtagttaaaatagtt |
39718942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University