View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_23 (Length: 397)
Name: NF7489_low_23
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 49433147 - 49432781
Alignment:
| Q |
20 |
accaggggatgttcaagactgagctctgtaacaaatggcaggaaactggcacatgcccttatggagaccactgtcaattcgctcatggcattggggagct |
119 |
Q |
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| T |
49433147 |
accaggggatgttcaagactgagctctgtaacaaatggcaggaaactggcacatgcccttatggagaccactgtcaattcgctcatggcattggggagct |
49433048 |
T |
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| Q |
120 |
tcgcccagtgatccgccacccacgctacaaaactgaggtctgcaggatggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcat |
219 |
Q |
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| T |
49433047 |
tcgcccagtgatccgccacccacgctacaaaactgaggtctgcaggatggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcat |
49432948 |
T |
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| Q |
220 |
gcacttactgaacaagagaaagctatgtcacaacctaagcccagatcaatgaagctggaaagatgaatggtctcatggaggtgtttgtttgactcaaagc |
319 |
Q |
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| T |
49432947 |
gcacttactgaacaagagaaagctatgtcacaacctaagcccagatcaatgaagctggaaagatgaatggtctcatggaggtgtttgtttgactcaaagc |
49432848 |
T |
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| Q |
320 |
atatacaacggtacataataatattcttgattgtgtaattacaacaatttacaaacagggacagtat |
386 |
Q |
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| T |
49432847 |
atatacaacggtacataataatattcttgattgtgtaattacaacaatttacaaacagggacagtat |
49432781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 39170897 - 39170714
Alignment:
| Q |
64 |
actggcacatgcccttatggagaccactgtcaattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgca |
163 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
39170897 |
actggcacatgcccttatggagaccactgtcaatttgctcacggcattggagagcttcgccaaatgatccgccatccacgctacaaaactgaggtctgca |
39170798 |
T |
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| Q |
164 |
ggatggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
247 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170797 |
ggatggtccttgctggggttgtgtgcccgtgtggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
39170714 |
T |
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