View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_low_25 (Length: 349)

Name: NF7489_low_25
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_low_25
NF7489_low_25
[»] chr4 (23 HSPs)
chr4 (87-275)||(13768527-13768715)
chr4 (87-332)||(43892751-43892998)
chr4 (93-275)||(46721868-46722050)
chr4 (154-275)||(32824561-32824682)
chr4 (193-279)||(39606297-39606383)
chr4 (193-279)||(27512917-27513003)
chr4 (193-279)||(32595098-32595184)
chr4 (216-273)||(4608124-4608181)
chr4 (208-276)||(20618754-20618822)
chr4 (193-273)||(23237517-23237597)
chr4 (223-273)||(18493822-18493872)
chr4 (223-273)||(22375927-22375977)
chr4 (10-82)||(32824234-32824299)
chr4 (223-273)||(54508600-54508650)
chr4 (193-274)||(21733880-21733961)
chr4 (193-276)||(20167507-20167590)
chr4 (223-273)||(34021337-34021387)
chr4 (229-276)||(37927780-37927827)
chr4 (228-274)||(44222981-44223027)
chr4 (225-269)||(23609302-23609346)
chr4 (223-274)||(30226686-30226737)
chr4 (193-261)||(18502008-18502076)
chr4 (223-270)||(8762863-8762910)
[»] chr6 (10 HSPs)
chr6 (87-320)||(29363773-29364006)
chr6 (87-279)||(34729500-34729692)
chr6 (89-275)||(3886139-3886325)
chr6 (89-275)||(583189-583375)
chr6 (175-334)||(30386778-30386938)
chr6 (193-274)||(13703074-13703155)
chr6 (193-273)||(7590495-7590575)
chr6 (10-88)||(30385859-30385930)
chr6 (193-264)||(5122289-5122360)
chr6 (230-276)||(7639610-7639656)
[»] chr7 (25 HSPs)
chr7 (87-275)||(83846-84034)
chr7 (87-275)||(46211905-46212093)
chr7 (87-332)||(48609334-48609581)
chr7 (95-275)||(45809876-45810056)
chr7 (87-274)||(758571-758747)
chr7 (87-241)||(39719643-39719797)
chr7 (150-272)||(2826749-2826871)
chr7 (193-279)||(23333304-23333390)
chr7 (10-88)||(305057-305128)
chr7 (10-88)||(2828989-2829060)
chr7 (193-279)||(27098888-27098974)
chr7 (193-279)||(27179329-27179415)
chr7 (193-279)||(27571602-27571688)
chr7 (208-276)||(36558345-36558413)
chr7 (194-260)||(11468614-11468680)
chr7 (193-279)||(33036083-33036169)
chr7 (224-276)||(2410949-2411001)
chr7 (223-274)||(41532411-41532462)
chr7 (194-260)||(5437147-5437213)
chr7 (215-273)||(33335981-33336039)
chr7 (208-276)||(37205796-37205863)
chr7 (232-275)||(39719309-39719352)
chr7 (193-279)||(38892150-38892235)
chr7 (208-264)||(19532361-19532417)
chr7 (233-271)||(31174510-31174548)
[»] chr3 (17 HSPs)
chr3 (87-332)||(17653216-17653463)
chr3 (87-275)||(46823533-46823721)
chr3 (89-275)||(30342662-30342848)
chr3 (93-263)||(40285645-40285816)
chr3 (87-236)||(21295699-21295849)
chr3 (100-275)||(35734322-35734494)
chr3 (193-273)||(22775260-22775340)
chr3 (208-276)||(35238724-35238792)
chr3 (193-279)||(37057519-37057605)
chr3 (193-279)||(37224385-37224471)
chr3 (216-273)||(26769844-26769901)
chr3 (208-276)||(30500937-30501005)
chr3 (245-332)||(21295627-21295714)
chr3 (225-272)||(15871369-15871416)
chr3 (223-274)||(52724604-52724655)
chr3 (153-189)||(35734270-35734306)
chr3 (246-274)||(1211746-1211774)
[»] scaffold0049 (2 HSPs)
scaffold0049 (87-275)||(15001-15189)
scaffold0049 (89-279)||(46869-47059)
[»] chr5 (14 HSPs)
chr5 (87-275)||(17769205-17769393)
chr5 (87-275)||(39685558-39685746)
chr5 (133-273)||(13517244-13517383)
chr5 (193-279)||(39570826-39570912)
chr5 (100-278)||(8403301-8403479)
chr5 (199-279)||(6735906-6735986)
chr5 (194-274)||(21360904-21360984)
chr5 (193-279)||(12947294-12947381)
chr5 (193-262)||(42580444-42580513)
chr5 (237-279)||(42092340-42092382)
chr5 (193-264)||(12933081-12933152)
chr5 (87-117)||(13517385-13517415)
chr5 (291-332)||(17769411-17769452)
chr5 (196-252)||(13734616-13734672)
[»] chr8 (11 HSPs)
chr8 (87-275)||(21441822-21442010)
chr8 (87-275)||(41323410-41323598)
chr8 (87-332)||(4072456-4072703)
chr8 (89-275)||(18606017-18606203)
chr8 (194-276)||(10713849-10713931)
chr8 (193-273)||(33538360-33538440)
chr8 (200-270)||(30932146-30932216)
chr8 (89-130)||(2811316-2811357)
chr8 (193-276)||(7559085-7559168)
chr8 (291-332)||(21442028-21442069)
chr8 (218-270)||(1233785-1233837)
[»] chr1 (19 HSPs)
chr1 (87-275)||(10619792-10619980)
chr1 (87-275)||(15757405-15757593)
chr1 (95-275)||(7493396-7493576)
chr1 (157-332)||(44429776-44429953)
chr1 (96-236)||(48770403-48770542)
chr1 (193-279)||(44592582-44592668)
chr1 (93-275)||(33409802-33409979)
chr1 (193-274)||(27773553-27773634)
chr1 (195-272)||(36156955-36157032)
chr1 (193-279)||(43410932-43411018)
chr1 (215-276)||(39618458-39618519)
chr1 (220-273)||(50303961-50304014)
chr1 (193-276)||(6764484-6764567)
chr1 (194-260)||(29681092-29681158)
chr1 (223-273)||(50099606-50099656)
chr1 (193-269)||(43022554-43022630)
chr1 (216-279)||(26632991-26633053)
chr1 (194-260)||(48366676-48366742)
chr1 (245-274)||(48770389-48770418)
[»] chr2 (22 HSPs)
chr2 (87-274)||(5382553-5382744)
chr2 (89-275)||(36314444-36314631)
chr2 (89-275)||(10585099-10585285)
chr2 (157-332)||(9190281-9190458)
chr2 (157-275)||(1043292-1043410)
chr2 (89-275)||(1592961-1593147)
chr2 (100-236)||(7494759-7494895)
chr2 (94-214)||(22333390-22333510)
chr2 (100-267)||(10412674-10412838)
chr2 (100-228)||(12563719-12563847)
chr2 (193-274)||(41732611-41732692)
chr2 (193-273)||(2096103-2096183)
chr2 (215-274)||(14160588-14160647)
chr2 (93-279)||(19590798-19590985)
chr2 (223-274)||(21613392-21613443)
chr2 (223-274)||(9754039-9754090)
chr2 (193-260)||(21278626-21278693)
chr2 (223-274)||(14950635-14950686)
chr2 (245-320)||(7494699-7494774)
chr2 (230-278)||(25280005-25280053)
chr2 (293-332)||(1043430-1043469)
chr2 (245-279)||(12563840-12563874)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 13768715 - 13768527
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13768715 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 13768616  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13768615 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactc 13768527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 43892751 - 43892998
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  43892751 atattgttattatttattatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaa 43892850  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc--nnnnn 284  Q
    ||||| |||||||||||||  |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||           
T  43892851 gatagaaaaaattatttcatctaaaattaaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatacatactcactcagaaaaa 43892950  T
Q  285 nnnntatttttgggatagcaagggctacccctccctactactaccatc 332  Q
        | |||||||| |||||||||||||||||||||  ||||||||||    
T  43892951 tacttttttttggggtagcaagggctacccctcccttgtactaccatc 43892998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 93 - 275
Target Start/End: Complemental strand, 46722050 - 46721868
Alignment:
Q  93 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagt 192  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||| |     
T  46722050 ttattatttattatttatctcttttgggtgttattcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatgga 46721951  T
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    || |||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  46721950 aagaattatttcacttaaaataaaatttggggtagctaaatatatattattaggggtagctaaaaataaaaatatccctactc 46721868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 32824561 - 32824682
Alignment:
Q  154 aataatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagct 253  Q
    ||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||| ||| ||| | ||||||||||| ||||| ||||||||| |    
T  32824561 aataatttgaagttcgaccggaagttaaataaaaatgaaaaaaattatttcacttaaaataaaatttgggatagccaaatatttattactaggggtagtt 32824660  T
Q  254 aaatataaaaatatacctactc 275  Q
    ||||||||||||||||||||||    
T  32824661 aaatataaaaatatacctactc 32824682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 39606297 - 39606383
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  39606297 aaaaattattgcacctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 39606383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 27513003 - 27512917
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  27513003 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 27512917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 32595098 - 32595184
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  32595098 aaaaattattgcacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 32595184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 4608181 - 4608124
Alignment:
Q  216 aacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4608181 aacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 4608124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 20618822 - 20618754
Alignment:
Q  208 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  20618822 taaaattaaatttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactca 20618754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 23237517 - 23237597
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||| ||  ||||||  |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23237517 aaaaattattacatctaaaatcgaacttggggcagccaaatatatattattaggggtagctaaacataaaaatatacctac 23237597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 18493822 - 18493872
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18493822 ggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 18493872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 22375927 - 22375977
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22375927 ggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 22375977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 32824234 - 32824299
Alignment:
Q  10 aagaatattagtgattcccatgatcttaaacatcaagtgtaaagtgtagtatgaaaataaattcaaatgatga 82  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  32824234 aagaatattagtgattcccatgatcttaaacatc-------aagtgtagtatgaaaataaattcaaatgatga 32824299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 54508600 - 54508650
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54508600 ggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 54508650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 21733961 - 21733880
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||| ||||| ||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |  ||||||||||    
T  21733961 aaaagttattccacctaaaatcaaacttggggtagccaactatatattattaggggtagctaaatatatatgtatacctact 21733880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 20167590 - 20167507
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    ||||||||||  || |||||| ||||||| |||||||||||||||||||  || ||||||| ||||||||||||||| ||||||    
T  20167590 aaaaattattctacctaaaatcaaacttggggtagccaaatatatattaccagaggtagcttaatataaaaatatacttactca 20167507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 34021337 - 34021387
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  34021337 ggtagccaaatatatactattaggggtagctaaacataaaaatatacctac 34021387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 37927827 - 37927780
Alignment:
Q  229 caaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  37927827 caaatatatattattatgggtagctaaatataaaaatatacatactca 37927780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 44222981 - 44223027
Alignment:
Q  228 ccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||    
T  44222981 ccaaatatatattattaggggtagttaaacataaaaatatacctact 44223027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 23609302 - 23609346
Alignment:
Q  225 tagccaaatatatattattaggggtagctaaatataaaaatatac 269  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  23609302 tagccaaatatatattattagggatagcaaaatataaaaatatac 23609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 30226686 - 30226737
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||| ||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  30226686 ggtaaccaaatatatattattaggagtagccaaatataataatatacctact 30226737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 18502076 - 18502008
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataa 261  Q
    |||||||||| ||| ||||||  |||||  |||||||||||||||||||| |||||||| |||| ||||    
T  18502076 aaaaattattacacctaaaatcgaacttagggtagccaaatatatattatcaggggtagttaaacataa 18502008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 8762863 - 8762910
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 270  Q
    |||||| |||||| | ||||| ||||||||||||||||||||||||||    
T  8762863 ggtagctaaatattttttatttggggtagctaaatataaaaatatacc 8762910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 87 - 320
Target Start/End: Original strand, 29363773 - 29364006
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29363773 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 29363872  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactcnnnnnnn 286  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||           
T  29363873 gatagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggagtagctaaatataaaaatatacctactcgctcagaaaaa 29363972  T
Q  287 nntatttttgggatagcaagggctacccctccct 320  Q
      | |||||||| |||||||||||||||||||||    
T  29363973 tatttttttggggtagcaagggctacccctccct 29364006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 87 - 279
Target Start/End: Complemental strand, 34729692 - 34729500
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  34729692 atattgttattatttattatttatctctttttggtattaatctttcggttcctatacgatattatcaaataatttgaagttcgatcgaaagttaaataaa 34729593  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  34729592 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatactattaggggtagctaaatataaaaatatacccactcactc 34729500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 3886325 - 3886139
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  3886325 attgttattatttattatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 3886226  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3886225 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 3886139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 89 - 275
Target Start/End: Original strand, 583189 - 583375
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| || | || || ||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  583189 attgttattatttcttatttatctcttttgggtgttattctttcggattctgtaggacatgattgaataatttaaagtttgaccggaagttaaataaaga 583288  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | ||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  583289 tggaaaaaattatttcatttaaaataaaacttggggtaaccaaatatatattattaggggtagctaaatataaaaatatacctactc 583375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 30386778 - 30386938
Alignment:
Q  175 aagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30386778 aagttaaataaagatagaaaaaaatatttcacttaaaattaaacttgagatagctaaatatatattattaggggtagctaaatataaaaatatacctact 30386877  T
Q  275 cactc-nnnnnnnnntatttttgggatagcaagggctacccctccctactactaccatctg 334  Q
    | |||          | ||||| || |||||||||||||||||||||  ||||||||||||    
T  30386878 cgctcagaaaaatatttttttttgggtagcaagggctacccctcccttgtactaccatctg 30386938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 13703155 - 13703074
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13703155 aaaaattatttcatctaaaattaaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatatacctact 13703074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 7590495 - 7590575
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||| ||  ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7590495 aaaaattattacatctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 7590575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 30385859 - 30385930
Alignment:
Q  10 aagaatattagtgattcccatgatcttaaacatcaagtgtaaagtgtagtatgaaaataaattcaaatgatgatagcat 88  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  30385859 aagaatattagtgattcccatgatcttaaacatc-------aagtgtagtatgaaaataaattcaaatgatgatagcat 30385930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 5122289 - 5122360
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 264  Q
    |||| ||||||||| ||||||  |||||| ||||| |||| ||||||||||||||||| ||| |||||||||    
T  5122289 aaaatttatttcacataaaatcgaacttggggtagtcaaaaatatattattaggggtaactatatataaaaa 5122360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 7639656 - 7639610
Alignment:
Q  230 aaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    ||||||||||||| |||| |||||||||||||| ||||| |||||||    
T  7639656 aaatatatattataagggatagctaaatataaatatatatctactca 7639610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 83846 - 84034
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  83846 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 83945  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| |||| |||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  83946 gatagaaaaatttatttcacttaaaattaaatttggggtaactaaatatatattattaggggtagctaaatataaaaatatacctactc 84034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 46211905 - 46212093
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46211905 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 46212004  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    || || ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  46212005 gaaagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattagaagtagctaaatataaaaatatacctactc 46212093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 48609334 - 48609581
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48609334 atattgttattatttattatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatttgaagttcgaccgaaagttaaataaa 48609433  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc--nnnnn 284  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| |||| |||           
T  48609434 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacccactcgctcagaaaaa 48609533  T
Q  285 nnnntatttttgggatagcaagggctacccctccctactactaccatc 332  Q
        | |||||||| |||||||||||||||||||||  ||||||||||    
T  48609534 tatttttttttggggtagcaagggctacccctcccttgtactaccatc 48609581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 45809876 - 45810056
Alignment:
Q  95 attatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaa 194  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | ||    
T  45809876 attatttattatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccggaagctaaataaagatggaaa 45809975  T
Q  195 aaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45809976 aaattatttcacttaaaataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatatacctactc 45810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 758747 - 758571
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||             
T  758747 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatatgacattatcaaataatttgaagttcgaccgaaag--------- 758657  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
      ||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  758656 --tagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaagggtagataaatataaaaatatacctact 758571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 39719797 - 39719643
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  39719797 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttaaagttcgaccgaaagttaaataaa 39719698  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatatta 241  Q
    ||||| |||||||||||||  ||||||||||| || | |||| ||||||||||||    
T  39719697 gatagaaaaaattatttcatctaaaattaaacctgggatagctaaatatatatta 39719643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 2826871 - 2826749
Alignment:
Q  150 atcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggt 249  Q
    ||||||||||||||| || ||||||||| ||| ||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||||| | |    
T  2826871 atcaaataatttgaattttgaccggaaggtaattaaagatagaaaaaattatttcacttacaattaaacttggagtagctaaatatatattattagagat 2826772  T
Q  250 agctaaatataaaaatataccta 272  Q
    |||||||||||||||||||||||    
T  2826771 agctaaatataaaaatataccta 2826749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 23333304 - 23333390
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  23333304 aaaaattattgcacctaaaatcgaacttggagtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 23333390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 305057 - 305128
Alignment:
Q  10 aagaatattagtgattcccatgatcttaaacatcaagtgtaaagtgtagtatgaaaataaattcaaatgatgatagcat 88  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  305057 aagaatattagtgattcccatgatcttaaacatc-------aagtgtagtatgaaaataaattcaaatgatgatagcat 305128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 2829060 - 2828989
Alignment:
Q  10 aagaatattagtgattcccatgatcttaaacatcaagtgtaaagtgtagtatgaaaataaattcaaatgatgatagcat 88  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  2829060 aagaatattagtgattcccatgatcttaaacatcaag-------tgtagtatgaaaataaattcaaatgatgatagcat 2828989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 27098888 - 27098974
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| || ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||    
T  27098888 aaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaatataaacctactaactc 27098974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 27179415 - 27179329
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| || ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||    
T  27179415 aaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaatataaacctactaactc 27179329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 27571602 - 27571688
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  ||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  27571602 aaaaattattacacctaaaatcgaacatagggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 27571688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 36558413 - 36558345
Alignment:
Q  208 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||    
T  36558413 taaaatcaaacttgaggtagccaaatatatattattaggggtaatttaatataaaaatataccaactca 36558345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 11468680 - 11468614
Alignment:
Q  194 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 260  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  11468680 aaaattatttcaactaaaatcaaacttgaggtagccaaatatatattattagaggtagccaaatata 11468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 33036083 - 33036169
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||| |||||||| |||| |||||||||||| |||| ||||    
T  33036083 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcaggggtagttaaacataaaaatatacatactgactc 33036169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 2411001 - 2410949
Alignment:
Q  224 gtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  2411001 gtagccaaatatatattattaggggtagcttaatataaaaatataccaactca 2410949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 41532462 - 41532411
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  41532462 ggtagccaaatatatattattaggggtagccaaatataataatatacctact 41532411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 5437147 - 5437213
Alignment:
Q  194 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 260  Q
    ||||||||||||  |||||| ||||||| |||||||||||||||||||| ||||||||||| |||||    
T  5437147 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagctatatata 5437213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 33335981 - 33336039
Alignment:
Q  215 aaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  33335981 aaacttggggtagttaaatatatattattaggggtagctaaatataaatatatacctac 33336039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 37205796 - 37205863
Alignment:
Q  208 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||| |||||||||||| |||||||||    
T  37205796 taaaatcaaacttg-ggtagccaaatatatattataagggatagcttaatataaaaataaacctactca 37205863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 39719352 - 39719309
Alignment:
Q  232 atatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  39719352 atatatattattagggatagctaaatataaaaatatacctactc 39719309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 38892150 - 38892235
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  |||||| ||||  |||||||||||||| |||| |||||||| ||||||||||||||||| ||||    
T  38892150 aaaaattattacacctaaaatcgaacttggggtaatcaaatatatattatcaggg-tagctaaacataaaaatatacctactgactc 38892235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 19532361 - 19532417
Alignment:
Q  208 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 264  Q
    |||||| ||| ||| |||||||||||||||||||||| |||||||| |||| |||||    
T  19532361 taaaatcaaatttggggtagccaaatatatattattaagggtagcttaataaaaaaa 19532417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 31174510 - 31174548
Alignment:
Q  233 tatatattattaggggtagctaaatataaaaatatacct 271  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  31174510 tatatattattagggatagttaaatataaaaatatacct 31174548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 17653216 - 17653463
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17653216 atattgttattatttattatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatttgaagttcgaccgaaagttaaataaa 17653315  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactcnnnnnnn 286  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| |||| |||           
T  17653316 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacccactcgctcaaaaaaa 17653415  T
Q  287 nnta--tttttgggatagcaagggctacccctccctactactaccatc 332  Q
      ||  |||||||| |||||||||||||||||||||  ||||||||||    
T  17653416 tatatttttttggggtagcaagggctacccctcccttgtactaccatc 17653463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 46823721 - 46823533
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46823721 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 46823622  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| |||||||||||||  |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  46823621 gatagaaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactc 46823533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 30342848 - 30342662
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||  | |||||||||||||| || ||||||||||||||||||||| ||| ||||||||||    
T  30342848 attgttattatttattatttatctcttttgggtgttattcttccgattcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaaga 30342749  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | || |||||||||||||||||| ||| ||| |||||| |||||||||||||||| ||||| |||| |||||||||| |||||||    
T  30342748 tggaaagaattatttcacttaaaataaaatttggggtagctaaatatatattattagaggtagttaaaaataaaaatatccctactc 30342662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 40285816 - 40285645
Alignment:
Q  93 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatag- 191  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||| ||||| || ||||||||||||||||||||| ||| ||||||| ||| |     
T  40285816 ttattatttattatttatcttttttgggtgttaatcttccggttcctatatgacatgattaaataatttgaagttcgaccgaaagctaaataatgattga 40285717  T
Q  192 taaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaa 263  Q
     ||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  40285716 aaaaaaatatttcacttaaaatcaaacttgagatagctaaatatatattattagggatagctaaatataaaa 40285645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 21295849 - 21295699
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaat-aa 185  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  21295849 atattgttattatttattatttatctcttttaggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 21295750  T
Q  186 agatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatata 236  Q
    |||||| |||||||||||||  |||||||||| ||| |||||| |||||||    
T  21295749 agatagaaaaaattatttcatctaaaattaaatttggggtagctaaatata 21295699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 35734322 - 35734494
Alignment:
Q  100 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagat-agtaaaaat 198  Q
    |||||||||||||  ||||||||||||||||  |||||||||| || | | | ||||||||| |||||||  |||||| |||||| |||| |  ||||||    
T  35734322 ttattatttatct--tttgggtgttaatcttccggttcctatatgataatgttaaataatttcaagttcg--cggaagctaaatatagatgaaaaaaaat 35734417  T
Q  199 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||||||||||||| ||| ||  |||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  35734418 tatttcacttaaaataaaatttagggtagctaaatacatattattaagggtaactaaatataaaaatatacctactc 35734494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 22775260 - 22775340
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22775260 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 22775340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 35238724 - 35238792
Alignment:
Q  208 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  35238724 taaaattaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatataccaactca 35238792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 37057605 - 37057519
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||| ||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  37057605 aaaagttattgcacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 37057519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 37224471 - 37224385
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  37224471 aaaaattattacacctaaaatcgaacttgggatagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 37224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 26769844 - 26769901
Alignment:
Q  216 aacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26769844 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 26769901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 30500937 - 30501005
Alignment:
Q  208 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  30500937 taaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatataccaactca 30501005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 21295714 - 21295627
Alignment:
Q  245 ggggtagctaaatataaaaatatacctactcactcnnnnnnnnntatttttgggatagcaagggctacccctccctactactaccatc 332  Q
    ||||||||||||||||||||||||||||||| ||          | |||||||| |||||||||||||||||||||  ||||||||||    
T  21295714 ggggtagctaaatataaaaatatacctactcgctaagaaaaatatttttttggggtagcaagggctacccctcccttgtactaccatc 21295627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 15871369 - 15871416
Alignment:
Q  225 tagccaaatatatattattaggggtagctaaatataaaaatataccta 272  Q
    |||||||||||| |||| || |||||||||||||||||||||||||||    
T  15871369 tagccaaatataaattactaagggtagctaaatataaaaatataccta 15871416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 52724655 - 52724604
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  52724655 ggtagccaaatatatattattagggatagtcaaatataataatatacctact 52724604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 35734270 - 35734306
Alignment:
Q  153 aaataatttgaagttcgaccggaagttaaataaagat 189  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35734270 aaataatttgaagttcgaccggaagctaaataaagat 35734306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 1211774 - 1211746
Alignment:
Q  246 gggtagctaaatataaaaatatacctact 274  Q
    |||||||||||||||||||||||||||||    
T  1211774 gggtagctaaatataaaaatatacctact 1211746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 15189 - 15001
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  15189 atattgttattatttattatttatctctttcgggtgttaatctttcggttcctatacgacattatcaaataattaaaagttcgaccggaagttaaataaa 15090  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  15089 gatagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggggtagctaattataaaaatatacctactc 15001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 279
Target Start/End: Complemental strand, 47059 - 46869
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  47059 attgttattatttattatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 46960  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    | | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46959 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 46869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 17769205 - 17769393
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17769205 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 17769304  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| |||||||||||||  |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17769305 gatagaaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactc 17769393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 39685558 - 39685746
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  39685558 atattgttattatttattatttatctttttttggtgttaatctttcggttcctatacgacattatcaaata-tttgaagttcgatcggaagttaaataaa 39685656  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattag-gggtagctaaatataaaaatatacctactc 275  Q
     |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  39685657 aatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattagaggatagctaaatataaaaatatacctactc 39685746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 13517383 - 13517244
Alignment:
Q  133 ggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaa 232  Q
    ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||  |||||||||||||  |||||||||||||| |||||  |||    
T  13517383 ggttcttatacaacattatcaaataatttgaatttcgaccgaaagttaaataaagataaaaaaaattatttcatctaaaattaaacttggggtagttaaa 13517284  T
Q  233 tatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  13517283 tatatattatta-gggtagctaaatataaaaatatacctac 13517244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 39570912 - 39570826
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  39570912 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 39570826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 278
Target Start/End: Complemental strand, 8403479 - 8403301
Alignment:
Q  100 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaa-at 198  Q
    ||||||||||| | |||| |||||||||| |  ||| |||||||||||   |||||||||||||||||| || | ||  ||||||| ||| | |||| ||    
T  8403479 ttattatttatttgttttaggtgttaatcctccggt-cctatacgacacgttcaaataatttgaagttcaactgaaaactaaataaggatggaaaaagat 8403381  T
Q  199 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcact 278  Q
    |||| |||||||||| ||| || ||||||| ||||  |||||||||| |||||||||||| ||| |||||||||||||||    
T  8403380 tattccacttaaaataaaatttaaggtagctaaatgcatattattagaggtagctaaataaaaatatatacctactcact 8403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 6735986 - 6735906
Alignment:
Q  199 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||| ||| ||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6735986 tattgcacctaaaatcgaacttggggtagccaaatatatattattagaggtagctaaatataaaaatatacctactaactc 6735906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 21360984 - 21360904
Alignment:
Q  194 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||| |  ||||||  ||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  21360984 aaaattatttaaactaaaatcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctact 21360904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 12947294 - 12947381
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatat-aaaaatatacctactcactc 279  Q
    |||||||||| |||  |||||  |||||| |||||| |||||||||||||||| |||||||||| || ||||||||||||||| ||||    
T  12947294 aaaaattattacacaaaaaatcgaacttggggtagcaaaatatatattattagaggtagctaaacataaaaaatatacctactaactc 12947381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 42580513 - 42580444
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaa 262  Q
    |||||||||||||| |||||| ||| ||| | |||||||||||||||||||| |||||| | ||||||||    
T  42580513 aaaaattatttcacctaaaatcaaaattgggatagccaaatatatattattaagggtagattaatataaa 42580444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 42092340 - 42092382
Alignment:
Q  237 tattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  42092340 tattattaggggtagctaaacataaaaatatacctactaactc 42092382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 12933081 - 12933152
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 264  Q
    |||||||||| |||  |||||  |||||| |||| | |||||||||||||||| |||||||||| |||||||    
T  12933081 aaaaattattacacaaaaaatcgaacttggggtaacaaaatatatattattagaggtagctaaacataaaaa 12933152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 117
Target Start/End: Complemental strand, 13517415 - 13517385
Alignment:
Q  87 atattgttattatttattatttatctctttt 117  Q
    |||||||||||||||||||||||||||||||    
T  13517415 atattgttattatttattatttatctctttt 13517385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 17769411 - 17769452
Alignment:
Q  291 tttttgggatagcaagggctacccctccctactactaccatc 332  Q
    |||||||| |||||||||||||||||||||  ||||||||||    
T  17769411 tttttggggtagcaagggctacccctcccttgtactaccatc 17769452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 13734672 - 13734616
Alignment:
Q  196 aattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagc 252  Q
    ||||||||||  |||||| ||||||  | || |||||||||||||||||||||||||    
T  13734672 aattatttcatctaaaatcaaacttaggataaccaaatatatattattaggggtagc 13734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 21441822 - 21442010
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21441822 atattgttattatttattatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 21441921  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| |||||||||||||  |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21441922 gatagaaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactc 21442010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 41323410 - 41323598
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  41323410 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaaattaaataaa 41323509  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| |||||||||||||  |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  41323510 gatagaaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactc 41323598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 4072456 - 4072703
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  4072456 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttctaccgtaagttaaataaa 4072555  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc--nnnnn 284  Q
    ||||| |||||||||||||  |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |||           
T  4072556 gatagaaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcgctcagaaaaa 4072655  T
Q  285 nnnntatttttgggatagcaagggctacccctccctactactaccatc 332  Q
         ||||||||| |||||||||||||||||||||  ||||||||||    
T  4072656 aaataatttttggggtagcaagggctacccctcccttgtactaccatc 4072703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 18606203 - 18606017
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || || | |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  18606203 attgttattatttattatttatctcttttgggtgttattctttcggatcatgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 18606104  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18606103 tggaaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 18606017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 10713931 - 10713849
Alignment:
Q  194 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    ||||| ||||||| |||||||||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||| |||||    
T  10713931 aaaataatttcacctaaaattaaacttggggtagccaaatgtatattataaggggtagtttaatataaaaatataccaactca 10713849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 33538360 - 33538440
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||  ||| ||||||  |||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  33538360 aaaaattatgacacctaaaatcgaactcgaggtaaccaaatatatattattaggagtagctaaacataaaaatatacctac 33538440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 30932146 - 30932216
Alignment:
Q  200 atttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 270  Q
    ||||||| |||||| ||||||| | |||||||| ||||||||||||||  |||| ||||||||||||||||    
T  30932146 atttcacctaaaatcaaacttgggatagccaaacatatattattagggacagcttaatataaaaatatacc 30932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 2811357 - 2811316
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatctt 130  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  2811357 attgttattatttattatttatctcttttgggtgttattctt 2811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 7559085 - 7559168
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||||||| ||| |||||   |||||| |||||| ||| ||||||| |||| ||||| || |||| ||||||||||||||||    
T  7559085 aaaaattattccacataaaaccgaacttggggtagctaaagatatatttttagaggtagttatatatgaaaatatacctactca 7559168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 21442028 - 21442069
Alignment:
Q  291 tttttgggatagcaagggctacccctccctactactaccatc 332  Q
    |||||||| |||||||||||||||||||||  ||||||||||    
T  21442028 tttttggggtagcaagggctacccctcccttgtactaccatc 21442069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 1233785 - 1233837
Alignment:
Q  218 cttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 270  Q
    |||| ||||||  ||||| ||||||| |||||||||||||||||| |||||||    
T  1233785 cttggggtagctcaatatttattatttggggtagctaaatataaatatatacc 1233837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 10619980 - 10619792
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  10619980 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagtacgactggaagttaaataaa 10619881  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| |||||||||||||  |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10619880 gatagaaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactc 10619792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 15757593 - 15757405
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15757593 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaa 15757494  T
Q  187 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| ||| |||||||||  |||||||||||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  15757493 gatagaaaatattatttcatctaaaattaaacttggggtagttaaatatatattattaggggtagataaatataaaaatatacctactc 15757405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 95 - 275
Target Start/End: Complemental strand, 7493576 - 7493396
Alignment:
Q  95 attatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaa 194  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||| | ||    
T  7493576 attatttattatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaa 7493477  T
Q  195 aaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  7493476 aaattatttcacttaaaataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatatacctactc 7493396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 157 - 332
Target Start/End: Original strand, 44429776 - 44429953
Alignment:
Q  157 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  44429776 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaatttggggtagccaaataaatattattaggggtagctaaa 44429875  T
Q  257 tataaaaatatacctactcactc--nnnnnnnnntatttttgggatagcaagggctacccctccctactactaccatc 332  Q
    |||||||||||||||||||  ||           | |||||||| ||||||||||||||||| |||||||||||||||    
T  44429876 tataaaaatatacctactcgttcaaaaaattttttttttttggggtagcaagggctacccctgcctactactaccatc 44429953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 48770542 - 48770403
Alignment:
Q  96 ttatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaa 195  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||| |||  | ||||||||||| |||    
T  48770542 ttatttattatttatctattttgggtgttattctttcggttcctatacgacatgattaaataatttgaagttcgacc-gaaactgaataaagatagaaaa 48770444  T
Q  196 aattatttcacttaaaattaaacttgaggtagccaaatata 236  Q
    |||||||||||||||||| ||||||| |||||| |||||||    
T  48770443 aattatttcacttaaaataaaacttggggtagctaaatata 48770403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 44592668 - 44592582
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  44592668 aaaaattattacacctaaaatcaaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactc 44592582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 33409802 - 33409979
Alignment:
Q  93 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagt 192  Q
    |||||||||||||||||||| |||||| |||||||||| |||||||||||||| |  || |||| ||||||||||||| |||||| ||||||| ||| |     
T  33409802 ttattatttattatttatcttttttggatgttaatcttctggttcctatacgataagattaaatcatttgaagttcgatcggaagctaaataaggatggg 33409901  T
Q  193 aaaaa-ttatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    ||||| ||||||| | |||||| ||||||  |||||  |||||||      ||||||| | || ||||||||||||||||||||    
T  33409902 aaaaagttatttcccgtaaaataaaacttagggtagttaaatata------taggggtggttagatataaaaatatacctactc 33409979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 27773634 - 27773553
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||| ||| ||||||  |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  27773634 aaaaattattacacctaaaatcgaacttggggtaggcaaatatatattattaggggtagctaaacataaaaatatacctact 27773553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 36156955 - 36157032
Alignment:
Q  195 aaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatataccta 272  Q
    |||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  36156955 aaattattacacctaaaattgaacttggggtagccaaatatatattattaggggtagctaagcataaaaatataccta 36157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 43411018 - 43410932
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||| ||  |||||| ||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  43411018 aaaaattattacatctaaaatcaaacttagggtaaccaaatatatattattagggatagctaaatataaaaatatacctactaactc 43410932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 39618458 - 39618519
Alignment:
Q  215 aaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  39618458 aaacttggggtagccaaatatatattattaggggtagcttaatataaaaatataccaactca 39618519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 50303961 - 50304014
Alignment:
Q  220 tgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50303961 tgagatagccaaatatatattattaggggtagctaaacataaaaatatacctac 50304014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 6764567 - 6764484
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactca 276  Q
    |||||||||| ||  |||||||||| ||| | ||||||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  6764567 aaaaattattccatctaaaattaaatttgggatagccaaatatatattattagcggtagcttaatacaaaaatatacatactca 6764484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 29681158 - 29681092
Alignment:
Q  194 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 260  Q
    ||||||||||||  |||||| ||||||| |||||||||||||||||||| ||||||||||| |||||    
T  29681158 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagctatatata 29681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 50099656 - 50099606
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  50099656 ggtagtcaaatatatattattaggggtagctaaacataaaaatatacctac 50099606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 43022630 - 43022554
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatac 269  Q
    |||||||||| ||  ||||||  |||||  ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  43022630 aaaaattattacatctaaaatcgaactttgggtagccaaatatatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 26633053 - 26632991
Alignment:
Q  216 aacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
    ||||||||||| |||||||||||||||||  |||| ||||| ||||||||||||||||| ||||    
T  26633053 aacttgaggtaaccaaatatatattatta-aggtaactaaacataaaaatatacctactaactc 26632991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 48366676 - 48366742
Alignment:
Q  194 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 260  Q
    ||||||||||||  |||||| ||||||  | |||||||||||||||||| ||||||||||| |||||    
T  48366676 aaaattatttcaactaaaatcaaacttaggatagccaaatatatattatcaggggtagctatatata 48366742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 48770418 - 48770389
Alignment:
Q  245 ggggtagctaaatataaaaatatacctact 274  Q
    ||||||||||||||||||||||||||||||    
T  48770418 ggggtagctaaatataaaaatatacctact 48770389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 87 - 274
Target Start/End: Original strand, 5382553 - 5382744
Alignment:
Q  87 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5382553 atattgttattatttattatttatctcttttgggtgttaatctttcggttcttatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 5382652  T
Q  187 gatagtaaaaattatttcac-ttaaaattaaactt-gaggtagccaa--atatatattattaggggtagctaaatataaaaatatacctact 274  Q
    ||||| |||||||||||||| ||||||||||| || | |||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  5382653 gatagaaaaaattatttcactttaaaattaaatttgggggtagctaaatatatatattattaggggtagctaaatataaaaatatacctact 5382744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 89 - 275
Target Start/End: Original strand, 36314444 - 36314631
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  36314444 attgttattatttattatttatctcttttggatgttattctttcggatcctatacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 36314543  T
Q  189 tagtaaaaattatttcacttaaaattaaactt-gaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | ||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36314544 tggaaaaaattatttcatttaaaataaaacttgggggtagccaaatatatattattaggggtaactaaatataaaaatatacctactc 36314631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 10585285 - 10585099
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||    
T  10585285 attgttattatttattatttatctcttttgggtgttattcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaaga 10585186  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | || |||||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  10585185 tggaaagaattatttcacttaaaataaaatttgggatagctaaatatatattattaggggtagctaaaaataaaaatatccctactc 10585099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 157 - 332
Target Start/End: Original strand, 9190281 - 9190458
Alignment:
Q  157 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  9190281 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 9190380  T
Q  257 tataaaaatatacctactcactcnnnnnnnnntat--ttttgggatagcaagggctacccctccctactactaccatc 332  Q
    ||||||||||||||||||| |||          ||  ||||||| ||||||||||||||||| |||||||||||||||    
T  9190381 tataaaaatatacctactcgctcaaaaaaaaaaattattttggggtagcaagggctacccctgcctactactaccatc 9190458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 1043292 - 1043410
Alignment:
Q  157 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  1043292 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 1043391  T
Q  257 tataaaaatatacctactc 275  Q
    |||||||||||||||||||    
T  1043392 tataaaaatatacctactc 1043410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 89 - 275
Target Start/End: Original strand, 1592961 - 1593147
Alignment:
Q  89 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 188  Q
    |||||||||||||||||||||||||||||||||  || |||||  | |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  1592961 attgttattatttattatttatctcttttgggttctattctttcagatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 1593060  T
Q  189 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactc 275  Q
    | | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1593061 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtaactaaatataaaaatataccaactc 1593147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 7494895 - 7494759
Alignment:
Q  100 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaatt 199  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7494895 ttattctttttctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaatt 7494796  T
Q  200 atttcacttaaaattaaacttgaggtagccaaatata 236  Q
    |||||||||||||||||| ||| |||||| |||||||    
T  7494795 atttcacttaaaattaaatttggggtagctaaatata 7494759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 22333390 - 22333510
Alignment:
Q  94 tattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagta 193  Q
    ||||| |||||||||||||| ||||||||||||||||  | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||| | |    
T  22333390 tattacttattatttatctcctttgggtgttaatcttccgattcctttacaacattatcaaataatttgaagtttgaccggaagctaaataaagatggaa 22333489  T
Q  194 aaaattatttcacttaaaatt 214  Q
    ||||||||||||| |||||||    
T  22333490 aaaattatttcacataaaatt 22333510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 267
Target Start/End: Complemental strand, 10412838 - 10412674
Alignment:
Q  100 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagat-agtaaaaat 198  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||| |    |||||||||||||| |||  |||||||||||| || |  ||||||    
T  10412838 ttattatttatctcttttgggtgttaatcttctagttcctatacaacatgac---ataatttgaagttcaaccaaaagttaaataaacatgaaaaaaaat 10412742  T
Q  199 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatat 267  Q
    || |||||||||||| ||| ||| |||||| |||| ||||||||||| | |||||||||||||||||||    
T  10412741 tagttcacttaaaataaaatttg-ggtagctaaatgtatattattagagatagctaaatataaaaatat 10412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 12563719 - 12563847
Alignment:
Q  100 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaatt 199  Q
    |||||||||||||||||||| ||||||||||    |||| ||||||||| || || |||||||||||||||||||||| |||||||  ||   |||||||    
T  12563719 ttattatttatctcttttggatgttaatcttccaattcccatacgacatgattaagtaatttgaagttcgaccggaagctaaataagaatgaaaaaaatt 12563818  T
Q  200 atttcacttaaaattaaacttgaggtagc 228  Q
    |||||||||||||| |||| || ||||||    
T  12563819 atttcacttaaaataaaacctggggtagc 12563847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 41732611 - 41732692
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||||||  ||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  41732611 aaaaattatttcaactaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacctact 41732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 2096183 - 2096103
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 273  Q
    |||||||||  ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2096183 aaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 2096103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 14160588 - 14160647
Alignment:
Q  215 aaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  14160588 aaacttggggtagccaactatatattattaggggtagctaagtatacaaatatacctact 14160647  T

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Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 19590798 - 19590985
Alignment:
Q  93 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagat-ag 191  Q
    ||||||||||| ||||| || ||||  |||||| || | |||||||||||| |||  ||||||||||| ||| | |||||| ||  ||||||| ||| |     
T  19590798 ttattatttatcatttaactgttttaagtgttattcctctggttcctatacaacaaaatcaaataattcgaaatacgaccgaaaactaaataaggatgaa 19590897  T
Q  192 taaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactc 279  Q
     ||| |||||| |||||||||| ||||||| ||||    ||| |||||||||| |||||  |||||||||| ||||||||| ||||||    
T  19590898 aaaagattattccacttaaaataaaacttggggtacatgaatgtatattattaagggtaagtaaatataaatatatacctattcactc 19590985  T

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Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 21613392 - 21613443
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  21613392 ggtagccaaatatatattattaggggtagccaaatataataatatacctact 21613443  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 9754090 - 9754039
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  9754090 ggtagccaattatatattattaacggtagctaaatataaaaatatacctact 9754039  T

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Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 21278693 - 21278626
Alignment:
Q  193 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 260  Q
    |||||||||||||  |||||| ||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  21278693 aaaaattatttcaactaaaatcaaacttggggtagtcaaataaatattattaggggtagccaaatata 21278626  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 14950635 - 14950686
Alignment:
Q  223 ggtagccaaatatatattattaggggtagctaaatataaaaatatacctact 274  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||||||||    
T  14950635 ggtagccaactatgtattattaggggtagctaagtatacaaatatacctact 14950686  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 7494774 - 7494699
Alignment:
Q  245 ggggtagctaaatataaaaatatacctactcactcnnnnnnnnntatttttgggatagcaagggctacccctccct 320  Q
    ||||||||||||||||||||||||||||||| |||         | ||||| || |||||||||||||||||||||    
T  7494774 ggggtagctaaatataaaaatatacctactcgctcaaaaaaatattttttttgggtagcaagggctacccctccct 7494699  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 25280053 - 25280005
Alignment:
Q  230 aaatatatattattaggggtagctaaatataaaaatatacctactcact 278  Q
    ||||||||||||||||  ||||| ||||||||| |||||||||||||||    
T  25280053 aaatatatattattagaagtagccaaatataaatatatacctactcact 25280005  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 1043430 - 1043469
Alignment:
Q  293 tttgggatagcaagggctacccctccctactactaccatc 332  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  1043430 tttggggtagcaagggctacccctgcctactactaccatc 1043469  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 12563840 - 12563874
Alignment:
Q  245 ggggtagctaaatataaaaatatacctactcactc 279  Q
    |||||||||||| ||||||||||||||||||||||    
T  12563840 ggggtagctaaacataaaaatatacctactcactc 12563874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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