View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_low_27 (Length: 326)

Name: NF7489_low_27
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_low_27
NF7489_low_27
[»] chr2 (30 HSPs)
chr2 (24-241)||(39233928-39234144)
chr2 (180-261)||(3834927-3835009)
chr2 (180-260)||(18234191-18234271)
chr2 (29-103)||(18510787-18510861)
chr2 (180-261)||(28784793-28784875)
chr2 (180-241)||(8873686-8873747)
chr2 (180-241)||(27352710-27352771)
chr2 (180-241)||(44075836-44075897)
chr2 (180-241)||(5429050-5429111)
chr2 (180-241)||(16011366-16011427)
chr2 (180-241)||(28783807-28783868)
chr2 (180-252)||(4069609-4069681)
chr2 (179-257)||(39475404-39475483)
chr2 (179-237)||(5429798-5429856)
chr2 (180-241)||(2075674-2075735)
chr2 (180-241)||(2076405-2076466)
chr2 (180-237)||(22387069-22387126)
chr2 (184-260)||(2215018-2215093)
chr2 (179-258)||(15994460-15994540)
chr2 (182-241)||(914890-914949)
chr2 (180-261)||(26240991-26241073)
chr2 (180-241)||(26882735-26882796)
chr2 (24-92)||(14871978-14872046)
chr2 (180-240)||(25456608-25456668)
chr2 (180-241)||(2238819-2238880)
chr2 (180-241)||(20651484-20651545)
chr2 (180-241)||(28916286-28916347)
chr2 (180-241)||(28917102-28917163)
chr2 (180-241)||(35908420-35908481)
chr2 (180-232)||(35907366-35907418)
[»] chr8 (30 HSPs)
chr8 (20-104)||(4672094-4672178)
chr8 (180-241)||(7601706-7601767)
chr8 (179-261)||(11596549-11596632)
chr8 (182-237)||(40784809-40784864)
chr8 (179-241)||(30427080-30427142)
chr8 (182-257)||(42093429-42093505)
chr8 (182-241)||(14445251-14445310)
chr8 (179-241)||(15224751-15224813)
chr8 (180-241)||(41723209-41723270)
chr8 (180-251)||(35627036-35627107)
chr8 (180-241)||(14446047-14446108)
chr8 (180-241)||(37727102-37727163)
chr8 (180-241)||(39528864-39528925)
chr8 (180-241)||(39529560-39529621)
chr8 (180-258)||(42095028-42095107)
chr8 (180-261)||(5339868-5339950)
chr8 (180-257)||(30136099-30136177)
chr8 (180-261)||(30136694-30136776)
chr8 (180-241)||(10499858-10499919)
chr8 (180-241)||(23404254-23404315)
chr8 (180-241)||(23404928-23404989)
chr8 (180-241)||(24700422-24700483)
chr8 (29-92)||(25987683-25987746)
chr8 (24-95)||(28772019-28772090)
chr8 (34-92)||(33451461-33451519)
chr8 (180-241)||(5340540-5340601)
chr8 (180-241)||(24701124-24701185)
chr8 (196-241)||(26636256-26636301)
chr8 (180-241)||(36187179-36187240)
chr8 (181-241)||(13388372-13388432)
[»] chr5 (23 HSPs)
chr5 (180-241)||(3099086-3099147)
chr5 (181-261)||(3098306-3098386)
chr5 (180-236)||(16899910-16899966)
chr5 (29-103)||(42446176-42446250)
chr5 (180-241)||(40366260-40366321)
chr5 (182-241)||(6895197-6895256)
chr5 (180-241)||(19432540-19432601)
chr5 (182-241)||(39084311-39084370)
chr5 (180-241)||(31559033-31559094)
chr5 (180-241)||(38914273-38914334)
chr5 (181-261)||(6894352-6894434)
chr5 (182-241)||(29096830-29096889)
chr5 (180-261)||(31558239-31558321)
chr5 (180-261)||(32694748-32694830)
chr5 (180-241)||(3779479-3779540)
chr5 (180-241)||(11120210-11120271)
chr5 (29-92)||(13089678-13089741)
chr5 (180-241)||(13911173-13911234)
chr5 (197-242)||(24052407-24052452)
chr5 (180-241)||(26710200-26710261)
chr5 (180-241)||(26979934-26979995)
chr5 (196-241)||(35989579-35989624)
chr5 (20-92)||(21210921-21210993)
[»] chr3 (35 HSPs)
chr3 (180-252)||(54280853-54280927)
chr3 (180-241)||(21103601-21103662)
chr3 (179-241)||(42121735-42121797)
chr3 (182-261)||(51218107-51218188)
chr3 (181-241)||(54295093-54295153)
chr3 (180-239)||(43631210-43631269)
chr3 (180-261)||(43656191-43656272)
chr3 (180-241)||(15951512-15951573)
chr3 (180-241)||(31090674-31090735)
chr3 (180-241)||(44706911-44706972)
chr3 (180-241)||(44707547-44707608)
chr3 (180-260)||(11058420-11058499)
chr3 (179-261)||(53427407-53427487)
chr3 (29-102)||(25188310-25188384)
chr3 (180-261)||(42489256-42489338)
chr3 (180-261)||(54281672-54281756)
chr3 (180-241)||(4996371-4996432)
chr3 (180-241)||(4996893-4996954)
chr3 (180-241)||(23485500-23485561)
chr3 (180-241)||(31091329-31091390)
chr3 (180-241)||(41780392-41780453)
chr3 (180-241)||(44878986-44879047)
chr3 (182-257)||(34985101-34985177)
chr3 (217-261)||(53841017-53841061)
chr3 (182-241)||(48045639-48045698)
chr3 (180-241)||(1984847-1984908)
chr3 (196-241)||(3990842-3990887)
chr3 (180-241)||(8482558-8482619)
chr3 (180-241)||(23143518-23143579)
chr3 (180-241)||(25166743-25166804)
chr3 (180-241)||(41354775-41354836)
chr3 (180-225)||(53427978-53428023)
chr3 (196-241)||(54600150-54600195)
chr3 (180-240)||(25165900-25165960)
chr3 (20-92)||(34307437-34307509)
[»] chr1 (30 HSPs)
chr1 (182-241)||(39841264-39841323)
chr1 (180-260)||(30856098-30856178)
chr1 (180-241)||(46047276-46047337)
chr1 (180-241)||(21081040-21081101)
chr1 (180-261)||(46728691-46728774)
chr1 (182-241)||(1743209-1743268)
chr1 (198-261)||(39025394-39025459)
chr1 (180-241)||(171437-171498)
chr1 (183-261)||(29373932-29374012)
chr1 (180-241)||(30856894-30856955)
chr1 (180-241)||(41147275-41147336)
chr1 (180-241)||(51465752-51465813)
chr1 (179-260)||(1743995-1744078)
chr1 (180-257)||(43380516-43380595)
chr1 (180-261)||(51466437-51466521)
chr1 (180-241)||(16878746-16878807)
chr1 (180-241)||(19439269-19439330)
chr1 (180-241)||(43379770-43379831)
chr1 (24-92)||(7918958-7919026)
chr1 (180-241)||(21080376-21080437)
chr1 (180-241)||(26252804-26252864)
chr1 (180-241)||(37910732-37910793)
chr1 (180-237)||(39840511-39840568)
chr1 (180-241)||(39958001-39958062)
chr1 (180-241)||(39958605-39958666)
chr1 (180-241)||(46727929-46727990)
chr1 (180-241)||(50126444-50126505)
chr1 (24-92)||(5771640-5771708)
chr1 (195-243)||(23551686-23551734)
chr1 (197-241)||(30984145-30984189)
[»] chr7 (26 HSPs)
chr7 (29-105)||(33057491-33057567)
chr7 (180-258)||(26828766-26828843)
chr7 (182-261)||(14419392-14419473)
chr7 (180-241)||(6822605-6822666)
chr7 (180-241)||(21985575-21985636)
chr7 (180-233)||(41345436-41345489)
chr7 (179-241)||(41567920-41567982)
chr7 (180-241)||(11337708-11337769)
chr7 (180-241)||(17995850-17995911)
chr7 (180-233)||(37796598-37796651)
chr7 (195-241)||(21984874-21984920)
chr7 (180-261)||(40193861-40193943)
chr7 (180-241)||(789299-789360)
chr7 (180-225)||(26829629-26829674)
chr7 (180-241)||(32497001-32497062)
chr7 (180-241)||(42276530-42276591)
chr7 (180-241)||(47723476-47723536)
chr7 (182-230)||(46196746-46196794)
chr7 (180-241)||(7945334-7945395)
chr7 (180-241)||(23966316-23966377)
chr7 (180-241)||(26585475-26585536)
chr7 (180-241)||(28762976-28763037)
chr7 (180-237)||(34458851-34458908)
chr7 (180-241)||(35088374-35088435)
chr7 (182-261)||(16779769-16779849)
chr7 (24-104)||(34978403-34978483)
[»] chr6 (12 HSPs)
chr6 (183-260)||(544343-544422)
chr6 (186-260)||(3184691-3184765)
chr6 (180-241)||(1175100-1175161)
chr6 (180-241)||(476922-476983)
chr6 (180-241)||(477647-477708)
chr6 (29-95)||(8645420-8645486)
chr6 (196-241)||(9699153-9699198)
chr6 (180-241)||(24051256-24051317)
chr6 (180-241)||(29979222-29979283)
chr6 (180-241)||(31170213-31170274)
chr6 (180-241)||(32403976-32404037)
chr6 (181-241)||(2812494-2812554)
[»] chr4 (29 HSPs)
chr4 (180-261)||(29145212-29145295)
chr4 (31-101)||(41262232-41262302)
chr4 (20-92)||(2004085-2004157)
chr4 (180-261)||(29144824-29144907)
chr4 (182-261)||(9170666-9170744)
chr4 (182-241)||(54110480-54110539)
chr4 (179-241)||(39263626-39263688)
chr4 (180-241)||(865416-865477)
chr4 (180-241)||(29517831-29517892)
chr4 (182-241)||(866269-866328)
chr4 (180-233)||(572176-572229)
chr4 (180-261)||(24573729-24573810)
chr4 (180-261)||(44876066-44876147)
chr4 (181-230)||(48614226-48614275)
chr4 (180-241)||(48615217-48615278)
chr4 (180-241)||(53535596-53535657)
chr4 (183-241)||(42712130-42712189)
chr4 (180-241)||(12658385-12658447)
chr4 (179-241)||(54109498-54109559)
chr4 (180-241)||(6056410-6056471)
chr4 (180-241)||(38657828-38657889)
chr4 (180-241)||(51162909-51162970)
chr4 (185-241)||(11701680-11701736)
chr4 (180-234)||(6711118-6711172)
chr4 (179-241)||(50064669-50064731)
chr4 (180-241)||(15807657-15807718)
chr4 (180-241)||(47864490-47864551)
chr4 (31-95)||(5386486-5386550)
chr4 (181-241)||(38658498-38658558)
[»] scaffold0785 (1 HSPs)
scaffold0785 (179-241)||(1568-1630)
[»] scaffold0014 (1 HSPs)
scaffold0014 (180-261)||(135484-135566)
[»] scaffold0187 (1 HSPs)
scaffold0187 (180-241)||(28284-28345)
[»] scaffold0141 (2 HSPs)
scaffold0141 (180-241)||(10307-10368)
scaffold0141 (196-241)||(11135-11180)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 39234144 - 39233928
Alignment:
Q  24 ccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccctttataatactgcaaattgtca 123  Q
    ||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  39234144 ccaccacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaatatcaatgccctttatattactgcaaattgtca 39234045  T
Q  124 atactatattttaaataacataaatgataggctgctgaaatattattannnnnnnagcttaaatatgatagtcgtccctgtaatttggtccagttttaat 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||| |||||||||||||||||| || |||| ||    
T  39234044 atactatattttaaataacataaatgataggctgcggaaatattattattttttg-gcttaaatatgataatcgtccctgtaatttggttcaattttgat 39233946  T
Q  224 tttcgtccctgtaaaaaa 241  Q
    |||||||| | |||||||    
T  39233945 tttcgtccatataaaaaa 39233928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 3834927 - 3835009
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||| ||||||||    
T  3834927 gcttaaatatgataatcgtccctgtaatttggtctagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctg 3835009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 18234191 - 18234271
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 260  Q
    |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |  ||||||| |||||||    
T  18234191 gcttaaatatgatattcgtctctgtaatttggaccagttttgattttcgtccctgtaaaaaaaaaattgaaatacatccct 18234271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 18510787 - 18510861
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccctt 103  Q
    |||||||||||||||||||||| | |||| ||||||| ||||||||||||| |||||||||||| || |||||||    
T  18510787 acctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattgccctt 18510861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 28784875 - 28784793
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 261  Q
    |||||||||| ||| ||||| ||||||||||||| |||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  28784875 gcttaaatattataatcgtctctgtaatttggtcaagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctg 28784793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 8873686 - 8873747
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  8873686 gcttaaatatgattttcgtccctgtaatttggacccgttttaattttcgtccctgtaaaaaa 8873747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 27352771 - 27352710
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||    
T  27352771 gcttaaatatgataatcgtccctataatttgatccagtttgaattttcgtccctgtaaaaaa 27352710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 44075836 - 44075897
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||    
T  44075836 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtctctataaaaaa 44075897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 5429050 - 5429111
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| | | |||||||||||||||| ||||||| ||||||||||||||||||||    
T  5429050 gcttaaatatgaaaattgtccctgtaatttggttcagttttgattttcgtccctgtaaaaaa 5429111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 16011366 - 16011427
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||||||||    
T  16011366 gcttaaatatgataatcgttcttgtaatttagtccagttttgattttcgtccctgtaaaaaa 16011427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 28783807 - 28783868
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||| |||||||| ||||| ||||||||||||||| |||||||||    
T  28783807 gcttaaatatgataatcgtccatgtaatttagtccaattttaattttcgtccatgtaaaaaa 28783868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 4069609 - 4069681
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaat 252  Q
    |||||||||||||| | |||||| ||||||||  ||||||||||||||||| |||||||||| | ||||||||    
T  4069609 gcttaaatatgataattgtccctataatttgggtcagttttaattttcgtctctgtaaaaaaaaatttgaaat 4069681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 39475404 - 39475483
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgta-aaaaatactttgaaatgcatc 257  Q
    ||||||||||| ||| ||||| |||||||||| ||||||||| |||||||| |||||| ||||| |||||||||| ||||    
T  39475404 agcttaaatataataatcgtctctgtaatttgatccagttttgattttcgttcctgtagaaaaaaactttgaaatacatc 39475483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 5429856 - 5429798
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 237  Q
    ||||||||||||||| |||||||| |||||||||||| |||| ||||||||||| ||||    
T  5429856 agcttaaatatgataatcgtccctataatttggtccaattttgattttcgtcccagtaa 5429798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 2075674 - 2075735
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||||||||||||| |  ||||||| |||||||||||| |||||||    
T  2075674 gcttaaatatgataatcgtccctgtaatttaggtcagttttgattttcgtccctataaaaaa 2075735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 2076466 - 2076405
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||| ||||||||| | |||||| ||||||||||||||||| |||||||||| |||||||||    
T  2076466 gctttaatatgataattgtccctataatttggtccagttttgattttcgtccttgtaaaaaa 2076405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 22387126 - 22387069
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 237  Q
    |||||||||||||  ||||||||||||||||| |  ||||||||||||||||||||||    
T  22387126 gcttaaatatgattttcgtccctgtaatttggactcgttttaattttcgtccctgtaa 22387069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 2215093 - 2215018
Alignment:
Q  184 aaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 260  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||||| | |||||||| |||||||    
T  2215093 aaatataataatcgtccctgtaatttgggccagttttgattttcgt-cctgcaaaaaaaattttgaaatacatccct 2215018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 15994540 - 15994460
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatcc 258  Q
    ||||||||||||||| |||||| | |||||||   ||||||| |||||||||||||||| |||| |||||||||| |||||    
T  15994540 agcttaaatatgataatcgtccatataatttgagtcagttttgattttcgtccctgtaaaaaaaaactttgaaatacatcc 15994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 914949 - 914890
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| ||||||||||||||| | | |||||||||||||| ||||| ||||||    
T  914949 ttaaatatgataatcgtccctgtaattttggctagttttaattttcgaccctgcaaaaaa 914890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 26241073 - 26240991
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||||||||||||| |||| |||||||| | ||||||||    
T  26241073 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctg 26240991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 26882796 - 26882735
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||| ||||||||||  | ||||| ||||||||||||||||||||    
T  26882796 gcttaaatatgattttcgtccatgtaatttgggtccgttttgattttcgtccctgtaaaaaa 26882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 14871978 - 14872046
Alignment:
Q  24 ccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||| |||||||||||||||||| ||| |||||| ||| | | ||| |||||||| |||||||||||||    
T  14871978 ccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaata 14872046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 25456668 - 25456608
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaa 240  Q
    |||||||||||||| |||||  ||||| |||| |||||||| | |||||||||||||||||    
T  25456668 gcttaaatatgataatcgtcagtgtaacttggaccagttttcaatttcgtccctgtaaaaa 25456608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 2238880 - 2238819
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  2238880 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 2238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 20651484 - 20651545
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | ||||||||||| |   |||||||| | ||||||||||||||||||    
T  20651484 gcttaaatatgatattagtccctgtaatataagccagttttgaatttcgtccctgtaaaaaa 20651545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 28916286 - 28916347
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  28916286 gcttaaatatgcaaaccgtccctgtaatttggacgaattttgattttcgtccctgtaaaaaa 28916347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 28917163 - 28917102
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  28917163 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 28917102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 35908481 - 35908420
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| | | |||| |||||||||| | |||||| |||||||||| |||||||||    
T  35908481 gcttaaatatgacatttgtccatgtaatttgggcgagttttgattttcgtccttgtaaaaaa 35908420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 35907366 - 35907418
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccc 232  Q
    |||| ||||||||| | ||||||||||||||||| |||||| |||||| ||||    
T  35907366 gcttcaatatgataattgtccctgtaatttggtctagttttgattttcatccc 35907418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 4672094 - 4672178
Alignment:
Q  20 tgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgcccttt 104  Q
    ||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  4672094 tgtaccaccgcctaaatttctttgtattatttggttgtctaatagggtgtcacaagaaaaagttgttcaaatatcaatgcccttt 4672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 7601767 - 7601706
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7601767 gcttaaatatgataatcgtccctgtaatttgggccagttttgattttcgtccctgtaaaaaa 7601706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 11596632 - 11596549
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 261  Q
    ||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  11596632 agcttaaatatgagaatcgtcccagtaatttggaccagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctg 11596549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 40784809 - 40784864
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 237  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40784809 ttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgtaa 40784864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 30427080 - 30427142
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||    
T  30427080 agcttaaatatgataatcgtccctgtaatttggttcagtttttattttcgtccttgtaaaaaa 30427142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 42093429 - 42093505
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatc 257  Q
    |||||||||||| ||||||||||||||||  |||||||| |||||||||||||| |||||| |||||||||| ||||    
T  42093429 ttaaatatgataatcgtccctgtaatttgaaccagttttgattttcgtccctgtaaaaaaaaactttgaaatacatc 42093505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 14445251 - 14445310
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||    
T  14445251 ttaaatatgataatcgtctttgtaatttggtcaagttttaattttcgtccctgtaaaaaa 14445310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 15224751 - 15224813
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  15224751 agcttaaatatgattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 15224813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 41723209 - 41723270
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||| ||||||| |||||||    
T  41723209 gcttaaatatgataatcgtccctgtaatttggtcaagttttgatttccgtccctataaaaaa 41723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 35627107 - 35627036
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaa 251  Q
    ||||||| |||||  |||||||||||||||||  ||||||| |||||||| ||||||||||| |||||||||    
T  35627107 gcttaaacatgattttcgtccctgtaatttggatcagttttgattttcgttcctgtaaaaaaaactttgaaa 35627036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 14446108 - 14446047
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||||||||||||||| ||| |||| |||||| |||| ||||||||    
T  14446108 gcttaaatatgataatcgtccctgtaatttgggccaattttgattttcatccccgtaaaaaa 14446047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 37727102 - 37727163
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||| |||||||| | |||||||| ||||||||||||||||||||    
T  37727102 gcttaaatatgattttcgtccatgtaatttagaccagttttgattttcgtccctgtaaaaaa 37727163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 39528864 - 39528925
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||||||||||||  ||||||| ||||| ||||||||||||||    
T  39528864 gcttaaatatgattttcgtccctgtaatttgggtcagttttgatttttgtccctgtaaaaaa 39528925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 39529621 - 39529560
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  | |||||||||||||||  ||||||| ||||||||||||||||||||    
T  39529621 gcttaaatatgatttttgtccctgtaatttggatcagttttgattttcgtccctgtaaaaaa 39529560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 42095107 - 42095028
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatcc 258  Q
    |||||||||| ||| ||||| |||||||||| || |||||||||||||||| || | |||||| |||||||||| |||||    
T  42095107 gcttaaatataataatcgtctctgtaatttgatctagttttaattttcgtctctataaaaaaaaactttgaaatacatcc 42095028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 5339868 - 5339950
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||||||||||| |||||| |||||||| | ||||||||    
T  5339868 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctg 5339950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 30136099 - 30136177
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatc 257  Q
    |||||||||||||| ||||| |||||||||| || | || | |||||||||||||| |||||| |||||||||| ||||    
T  30136099 gcttaaatatgataatcgtctctgtaatttgatcaaattatgattttcgtccctgtaaaaaaaaactttgaaatacatc 30136177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 30136776 - 30136694
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| |||||| |||||||||  ||| |||| |||||  ||||||||| |||| |||||||||| ||||||||    
T  30136776 gcttaaatatgataatcgtccatgtaatttgaaccaattttgatttttatccctgtaaaaaaaaactttgaaatacatccctg 30136694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 10499858 - 10499919
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  10499858 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 10499919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23404254 - 23404315
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| ||  |||| |||||| |||||||||||||    
T  23404254 gcttaaatatgattttcgtccctgtaatttggacccattttcattttcctccctgtaaaaaa 23404315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 23404989 - 23404928
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||| | || ||||| |||||||| |||||||||||    
T  23404989 gcttaaatatgattttcgtccctgtaattttggcccgttttgattttcgttcctgtaaaaaa 23404928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 24700422 - 24700483
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  24700422 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 24700483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 25987746 - 25987683
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||||||||||||||||| |||   ||||| || ||| |||||||||||| |||||||||||||    
T  25987746 acctaaatttctttgtataatttagttgttcaaaaggttgtcacaagaaatggttgttcaaata 25987683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 28772090 - 28772019
Alignment:
Q  24 ccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 95  Q
    |||| |||||||||||||||||| |||   ||||  || ||| |||||||||||| ||||||||||||||||    
T  28772090 ccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatca 28772019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 33451519 - 33451461
Alignment:
Q  34 aatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    ||||||||||||| ||| |||||| ||| | | |||||||||||| |||||||||||||    
T  33451519 aatttctttgtataatttgattgtctaacaagttgtcacaagaaagggttgttcaaata 33451461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 5340601 - 5340540
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  |||| |||||||||||| || ||||| |||||||||| |||||||||    
T  5340601 gcttaaatatcattttcgttcctgtaatttgggcccgttttgattttcgtccttgtaaaaaa 5340540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 24701185 - 24701124
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  |||||||||||||||||  | ||||| |||||||||| |||||||||    
T  24701185 gcttaaatatcattttcgtccctgtaatttgggtccgttttgattttcgtccttgtaaaaaa 24701124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 26636301 - 26636256
Alignment:
Q  196 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  26636301 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 26636256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 36187240 - 36187179
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||| |  ||||||| |||||| ||||| |||||||    
T  36187240 gcttaaatatgattttcgtccctgtaatttagatcagttttgattttcatccctataaaaaa 36187179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 13388372 - 13388432
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||| | ||| |||||||||||  | ||||| | ||||||||||||||||||    
T  13388372 cttaaatatgatattagtctctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 13388432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 3099147 - 3099086
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3099147 gcttaaatatgataatcgtccatgtaatttggtccagttttaattttcgtccctgtaaaaaa 3099086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 3098306 - 3098386
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 261  Q
    ||||||||||||| ||||||||||||||| |  ||||||| ||||||||| |||||||||| |||||||||| ||||||||    
T  3098306 cttaaatatgataatcgtccctgtaatttaggtcagttttgattttcgtctctgtaaaaaaaactttgaaatacatccctg 3098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 16899910 - 16899966
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgta 236  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  16899910 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgta 16899966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 42446250 - 42446176
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccctt 103  Q
    |||||||||||||||||||||| | |||| ||||||| ||||||||||||| |||||||||||| || |||||||    
T  42446250 acctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattgccctt 42446176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 40366260 - 40366321
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  40366260 gcttaaatatgataatcgtccctgtaatttgggtcagttttgattttcgtccctgtaaaaaa 40366321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 6895256 - 6895197
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  6895256 ttaaatatgataatcgtccttgtaatttggtccagttttgattttcgtcccagtaaaaaa 6895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 19432601 - 19432540
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||||    
T  19432601 gcttaaatatgataatcgttcctgtaatttggttcagttttgatttttgtccctgtaaaaaa 19432540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 39084370 - 39084311
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||||||||    
T  39084370 ttaaatatgataatcgtccctctaatttgggccaattttgattttcgtccctgtaaaaaa 39084311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 31559094 - 31559033
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||| ||||||||| | |||||||| |||||||||||| |||||||    
T  31559094 gcttaaatatgataatcgtcactgtaattttggccagttttgattttcgtccctataaaaaa 31559033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 38914334 - 38914273
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||| |||||| | |||||||| ||||||||||||||||||||    
T  38914334 gcttaaatatgattttcgtccctataatttagaccagttttgattttcgtccctgtaaaaaa 38914273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 6894352 - 6894434
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 261  Q
    ||||||||||||| || ||||| |||||| | |||||||| ||||||||||||||   ||||| |||||||||| ||||||||    
T  6894352 cttaaatatgataatcatccctctaatttaggccagttttgattttcgtccctgttataaaaaaactttgaaatacatccctg 6894434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 29096830 - 29096889
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| | |||||| ||||||||||||||||||| ||||| || |||||||||||    
T  29096830 ttaaatatgaaaatcgtccatgtaatttggtccagttttgatttttgttcctgtaaaaaa 29096889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 31558239 - 31558321
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaa-aaatactttgaaatgcatccctg 261  Q
    |||||||||||||| ||||| ||||||||||   ||||||| |||||||||| |||||| ||| |||||||||  ||||||||    
T  31558239 gcttaaatatgataatcgtcactgtaatttgagtcagttttgattttcgtccatgtaaacaaaaactttgaaacacatccctg 31558321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 32694830 - 32694748
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| ||| ||||||| ||||| |||||||| ||||||||| || | |||||| || ||||||| ||||||||    
T  32694830 gcttaaatatgataatcgcccctgtagtttgggccagttttgattttcgtctctttaaaaaaaaacattgaaatacatccctg 32694748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 3779540 - 3779479
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||||  |||||||| || | |||| ||||||||||||||||||||    
T  3779540 gcttaaatatgataatcgtcctagtaatttgatcaaattttgattttcgtccctgtaaaaaa 3779479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 11120210 - 11120271
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  || || ||||||||||| || ||||| ||||||||||||||||||||    
T  11120210 gcttaaatatgattttcatctctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 11120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 13089741 - 13089678
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||||||||||||||||| |||  |||||| || ||| ||||| |||||| |||||||||||||    
T  13089741 acctaaatttctttgtataatttaattgttcaaaaggttgtcataagaaatggttgttcaaata 13089678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 13911173 - 13911234
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||| ||||||||||  | ||||| | ||||||||||||||||||    
T  13911173 gcttaaatatgatattagtccatgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 13911234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 24052452 - 24052407
Alignment:
Q  197 gtccctgtaatttggtccagttttaattttcgtccctgtaaaaaat 242  Q
    ||||||||||||||| |  ||||| |||||||||||||||||||||    
T  24052452 gtccctgtaatttggacgcgttttgattttcgtccctgtaaaaaat 24052407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 26710200 - 26710261
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  || |||| ||||||||| || ||||| ||||||||||||||||||||    
T  26710200 gcttaaatatcattttcatcccagtaatttgggcccgttttgattttcgtccctgtaaaaaa 26710261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 26979934 - 26979995
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  || |||| ||||||||| || ||||| ||||||||||||||||||||    
T  26979934 gcttaaatatcattttcatcccagtaatttgggcccgttttgattttcgtccctgtaaaaaa 26979995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 35989624 - 35989579
Alignment:
Q  196 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  35989624 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 35989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 21210921 - 21210993
Alignment:
Q  20 tgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    ||||| || |||||||||||||||||| ||  | ||||| |||| | |||||||  |||||||||||||||||    
T  21210921 tgtactactacctaaatttctttgtataatgtggttgttcaataagttgtcacataaaaaggttgttcaaata 21210993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 54280853 - 54280927
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctg--taaaaaatactttgaaat 252  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||    
T  54280853 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgtataaaaaaaactttgaaat 54280927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 21103662 - 21103601
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  21103662 gcttaaatatgattttcgtccctgtaatttggaccagttttgattttcgtccctgtaaaaaa 21103601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 42121797 - 42121735
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||||| | |||||||||    
T  42121797 agcttaaatatgataatcgtccctataatttggaccagttttaattttcgttcatgtaaaaaa 42121735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 51218107 - 51218188
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||| | |||||| ||||||||||||||||| || |||||||||||  |||||| |||||||||| ||||||||    
T  51218107 ttaaatatgataattgtccctataatttggtccagttttgatattcgtccctgtaaaaaaaaaactttgaaatacatccctg 51218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 54295153 - 54295093
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||| |||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  54295153 cttaaatatgataatcgtccatgtaatttgggtcagttttgattttcgtccctgtaaaaaa 54295093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 43631269 - 43631210
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaa 239  Q
    |||||||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||    
T  43631269 gcttaaatatgataatcgtccatgtgatttggtccagttttgattttcgttcctgtaaaa 43631210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 43656272 - 43656191
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| |||||| ||||||||||  ||||||| |||||||| ||||| |||||| |||||||||| ||||||||    
T  43656272 gcttaaatatgataatcgtccttgtaatttgggacagttttgattttcgt-cctgtaaaaaaaaactttgaaatacatccctg 43656191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 15951573 - 15951512
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  15951573 gcttaaatatcattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 15951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 31090674 - 31090735
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| || ||||| |||||||||||| |||||||    
T  31090674 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcgtccctataaaaaa 31090735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 44706911 - 44706972
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||||||||||||  | ||||| ||||||||||||||||||||    
T  44706911 gcttaaatatgattttcgtccctgtaatttgggtccgttttgattttcgtccctgtaaaaaa 44706972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 44707608 - 44707547
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| ||  |||| ||||||||||||||||||||    
T  44707608 gcttaaatatgattttcgtccctgtaatttggacccattttgattttcgtccctgtaaaaaa 44707547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 11058499 - 11058420
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 260  Q
    |||||||||||||  ||||||||||||||| |  ||||||| |||| ||||||||||||||| |||||||||  |||||||    
T  11058499 gcttaaatatgattttcgtccctgtaatttagatcagttttgatttccgtccctgtaaaaaa-actttgaaaaacatccct 11058420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 53427407 - 53427487
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||||||||| |||||||||| || ||||||| |||||| ||  ||||||||| |  ||||||| ||||||||    
T  53427407 agcttaaatatgatagtcgttcctgtaatttagttcagttttgattttcatctatgtaaaaaaaa--ttgaaatacatccctg 53427487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 25188384 - 25188310
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcac-aagaaaaggttgttcaaatatcaatgccct 102  Q
    ||||||||||||||||||||||   |||| ||||||| |||||| || ||||||||||||||||| || ||||||    
T  25188384 acctaaatttctttgtattatttagttgtctaataggttgtcacaaaaaaaaggttgttcaaataacattgccct 25188310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 42489338 - 42489256
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| | |||| ||||||||||  ||||||| ||||||||||| || |||||| ||||||||||  |||||||    
T  42489338 gcttaaatatgataattgtccttgtaatttgggtcagttttgattttcgtccccgtaaaaaaaaactttgaaatatatccctg 42489256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 54281756 - 54281672
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa---aaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| |||| ||||| |||||| |||  ||| ||||||||||||||||   |||| |||||||||| ||||||||    
T  54281756 gcttaaatatgataatcgttcctgttatttgggccaaatttgattttcgtccctgtaaaaaaaaaaactttgaaatacatccctg 54281672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 4996371 - 4996432
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | || ||||||||||||  ||||||| | ||||||||||||||||||    
T  4996371 gcttaaatatgatattagttcctgtaatttgggtcagttttgaatttcgtccctgtaaaaaa 4996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 4996954 - 4996893
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| |  ||||| ||||||||| ||||||||||    
T  4996954 gcttaaatatgattttcgtccctgtaatttgggctcgttttgattttcgtcactgtaaaaaa 4996893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23485500 - 23485561
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  23485500 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 23485561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 31091390 - 31091329
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||  |||||||||| || ||||| ||||||||||||||||||||    
T  31091390 gcttaaatatgattttcgtctttgtaatttgggcccgttttgattttcgtccctgtaaaaaa 31091329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 41780453 - 41780392
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| || ||||| ||||| ||||||||| ||||    
T  41780453 gcttaaatatgattttcgtccctgtaatttggacccgttttgatttttgtccctgtagaaaa 41780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 44879047 - 44878986
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  44879047 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 44878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 34985101 - 34985177
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatc 257  Q
    |||||||| ||| |||||  |||||||||||||| |||| |||||||||| ||| |||||| |||||||||| ||||    
T  34985101 ttaaatataataatcgtctgtgtaatttggtccaattttgattttcgtccatgtaaaaaaaaactttgaaatacatc 34985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 53841061 - 53841017
Alignment:
Q  217 ttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 261  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||    
T  53841061 ttttgattttagtccctgtaaaaaaaactttgaaatgcatccctg 53841017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 48045698 - 48045639
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||| ||||||||||||||  ||||| ||| ||||||| ||||||||    
T  48045698 ttaaatatgataatcgttcctgtaatttggtctcgttttgattgtcgtccccgtaaaaaa 48045639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 1984847 - 1984908
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  | ||||||||||||||||| ||  |||| |||||||||| |||||||||    
T  1984847 gcttaaatatgcaattcgtccctgtaatttgggcccattttgattttcgtccttgtaaaaaa 1984908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 3990887 - 3990842
Alignment:
Q  196 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  3990887 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 3990842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 8482619 - 8482558
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||| |||||||||||||    
T  8482619 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcctccctgtaaaaaa 8482558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 23143579 - 23143518
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  23143579 gcttaaatatgattttagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 23143518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 25166804 - 25166743
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  25166804 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 25166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 41354836 - 41354775
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||| | |||| |||||||||||||| |||   ||||||||||||||    
T  41354836 gcttaaatatgataatcgttcatgtactttggtccagttttgattcatgtccctgtaaaaaa 41354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 53428023 - 53427978
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattt 225  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||    
T  53428023 gcttaaatatgataatcgtttctgtaatttggtccagttttgattt 53427978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 54600150 - 54600195
Alignment:
Q  196 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  54600150 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 54600195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 25165900 - 25165960
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaa 240  Q
    |||||||||||  |  |||||||||||||||| | | |||| |||||||||||||||||||    
T  25165900 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaa 25165960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 34307509 - 34307437
Alignment:
Q  20 tgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||| ||| |||||||||||||||||| ||| | ||||  |||| | |||||||||||| | |||||||||||    
T  34307509 tgtatcactacctaaatttctttgtataatttggttgtccaataagttgtcacaagaaaggattgttcaaata 34307437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 39841323 - 39841264
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  39841323 ttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccctgtaaaaaa 39841264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 30856098 - 30856178
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 260  Q
    |||||||| ||||| |||||| | |||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||    
T  30856098 gcttaaatttgataatcgtccttataatttgggccagttttaattttcgtcactgtaaaaaaaactttgaaatacatccct 30856178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 46047337 - 46047276
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||    
T  46047337 gcttaaatatgataatcgtccatgtaatttagtccaattttaattttcgtccctgtaaaaaa 46047276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 21081101 - 21081040
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  ||||||||| ||||||||||||||||||    
T  21081101 gcttaaatatgatattagtccctgtaatttgggtcagttttaaatttcgtccctgtaaaaaa 21081040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 46728774 - 46728691
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctg--taaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| ||||| ||||| |||||  ||||||| |||||||||||||  ||||||| |||||||||| ||||||||    
T  46728774 gcttaaatatgataatcgtcactgtagtttgggtcagttttgattttcgtccctgtataaaaaaaactttgaaatacatccctg 46728691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 1743209 - 1743268
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||||||| |||||| || ||||||| ||||||||||||||||||||    
T  1743209 ttaaatatgataatcgtccctataatttagttcagttttgattttcgtccctgtaaaaaa 1743268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 39025394 - 39025459
Alignment:
Q  198 tccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||||||| |||| ||||||||||||||  |||||| |||||||||| ||||||||    
T  39025394 tccctgtaatttggtccaattttgattttcgtccctgtaaaaaaaaaactttgaaatacatccctg 39025459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 171498 - 171437
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| ||||| ||||||||||   ||||||| ||||||||||||||||||||    
T  171498 gcttaaatatgataatcgtctctgtaatttgagtcagttttgattttcgtccctgtaaaaaa 171437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 29374012 - 29373932
Alignment:
Q  183 taaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 261  Q
    ||||||||||| |||||| ||||||||||  ||||||| ||||||||| ||||  |||||| |||||||||| ||||||||    
T  29374012 taaatatgataatcgtccttgtaatttggatcagttttgattttcgtcactgtaaaaaaaaaactttgaaatacatccctg 29373932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 30856955 - 30856894
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| || ||||| |||||||||| |||||| |||||||| |||||||||||    
T  30856955 gcttaaatatgataatcttccctataatttggtctagttttgattttcgttcctgtaaaaaa 30856894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 41147336 - 41147275
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||| |||||||||| |||||||| |||||||| || ||||||||    
T  41147336 gcttaaatatgataatcgtccttgtaatttgggccagttttgattttcgttccggtaaaaaa 41147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 51465752 - 51465813
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  ||||||| ||||||||||||| ||||||    
T  51465752 gcttaaatatgataatagtccctgtaatttggatcagttttgattttcgtccctgcaaaaaa 51465813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 1744078 - 1743995
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaa--aaatactttgaaatgcatccct 260  Q
    ||||||||||||||| || ||  |||||||||| |||||||| |||||||| ||||||||  ||| |||||||||| |||||||    
T  1744078 agcttaaatatgataatcatctatgtaatttgggccagttttgattttcgttcctgtaaaagaaaaactttgaaatacatccct 1743995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 43380595 - 43380516
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgta--aaaaatactttgaaatgcatc 257  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||| ||| |  ||||| |||||||||| ||||    
T  43380595 gcttaaatatgataatcgtccctgtaatttggatcagttttgattttcgtctctgcaacaaaaaaactttgaaatacatc 43380516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 51466521 - 51466437
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa---aaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| |||||| | |||||| |  ||||||| ||||||||||||||||   |||| |||||||||| ||||||||    
T  51466521 gcttaaatatgataatcgtccttataatttaggtcagttttgattttcgtccctgtaaaaaaaaaaactttgaaatacatccctg 51466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 16878746 - 16878807
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||  || ||||| ||||||||||| ||||||||    
T  16878746 gcttaaatatgattttcgtccctgtaatttgaacccgttttgattttcgtcccagtaaaaaa 16878807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 19439330 - 19439269
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||| | |||||||||| || ||||| ||||||||||||||||||||    
T  19439330 gcttaaatatgattttcgttcttgtaatttgggcccgttttgattttcgtccctgtaaaaaa 19439269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 43379770 - 43379831
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||  ||||||||||||||    ||||||| ||||||||||||||||||||    
T  43379770 gcttaaatatgataaacgtccctgtaatttttgacagttttgattttcgtccctgtaaaaaa 43379831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 7919026 - 7918958
Alignment:
Q  24 ccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||| |||||||||||||||||| ||| | |||| ||| | | |||||||||||| |||||||||||||    
T  7919026 ccactacctaaatttctttgtataatttggttgtctaacaagttgtcacaagaaagggttgttcaaata 7918958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 21080376 - 21080437
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||||||||||||  | ||||| |||||| ||| |||||||||    
T  21080376 gcttaaatatgattttcgtccctgtaatttgggtccgttttgattttcatccttgtaaaaaa 21080437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 26252864 - 26252804
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||| |||||||||   ||||||| ||||||||||||||||||||    
T  26252864 gcttaaatatgataattgtcc-tgtaatttgagtcagttttgattttcgtccctgtaaaaaa 26252804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 37910793 - 37910732
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  ||||||| |||||||||  | ||||| ||||||||||||||||||||    
T  37910793 gcttaaatatcattttcgtccccgtaatttggatccgttttgattttcgtccctgtaaaaaa 37910732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 39840511 - 39840568
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 237  Q
    |||||||||||||| || ||| |||||||| |  ||||||| ||||||||||||||||    
T  39840511 gcttaaatatgataatcatccatgtaattttggtcagttttgattttcgtccctgtaa 39840568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 39958001 - 39958062
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | |||||||||| |||||||    
T  39958001 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctataaaaaa 39958062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 39958666 - 39958605
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  ||||| ||||||||||| || ||||| |||||||||| |||||||||    
T  39958666 gcttaaatatcattttcgtctctgtaatttgggcccgttttgattttcgtccttgtaaaaaa 39958605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 46727929 - 46727990
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | ||| ||| |||||||  ||||||| ||||||||||||||| ||||    
T  46727929 gcttaaatatgataatagtcactggaatttgggacagttttgattttcgtccctgtataaaa 46727990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 50126505 - 50126444
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||| ||||||||||  | ||||| | ||||||||||||||||||    
T  50126505 gcttaaatatgatattagtccatgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 50126444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 5771708 - 5771640
Alignment:
Q  24 ccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||| |||||||||||||||||| |||   |||| ||| ||| |||||||||||| | |||||||||||    
T  5771708 ccactacctaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatgattgttcaaata 5771640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 23551686 - 23551734
Alignment:
Q  195 tcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaata 243  Q
    ||||||||||||||||| |  ||||| |||||||||| |||||||||||    
T  23551686 tcgtccctgtaatttggacgcgttttgattttcgtccttgtaaaaaata 23551734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 30984189 - 30984145
Alignment:
Q  197 gtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||    
T  30984189 gtccctgtaatttggacgcgttttgattttcgtccctgtaaaaaa 30984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 33057491 - 33057567
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgcccttta 105  Q
    |||||||||||||||||||||| | |||| ||||||| |||||||||||||| ||||||||||| || |||||||||    
T  33057491 acctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaagattgttcaaataacattgcccttta 33057567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 26828766 - 26828843
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatcc 258  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| | |||||||| |||||    
T  26828766 gcttaaatatgataattgtccctgtaatttggtccagttttgattttcttccctgtaaaaaa-aatttgaaatacatcc 26828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 14419392 - 14419473
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa--tactttgaaatgcatccctg 261  Q
    |||||||||||| ||||||||||| |||||  ||||||| ||||||||||||||||||||   |||||||||| ||||||||    
T  14419392 ttaaatatgataatcgtccctgtattttggggcagttttgattttcgtccctgtaaaaaaagaactttgaaatacatccctg 14419473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 6822605 - 6822666
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | ||||||||||||||||| ||||||  |||||||||||||||||||    
T  6822605 gcttaaatatgataattgtccctgtaatttggtcaagttttggttttcgtccctgtaaaaaa 6822666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 21985636 - 21985575
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  21985636 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcgtccctgtaaaaaa 21985575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 41345489 - 41345436
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct 233  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  41345489 gcttaaatatgataatcgtccctataatttggtccagttttgattttcgtccct 41345436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 41567982 - 41567920
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||  || |||||||||||||| || ||||| ||||||||||||||||||||    
T  41567982 agcttaaatatgattttcatccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 41567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 11337769 - 11337708
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  11337769 gcttaaatatcattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 11337708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 17995850 - 17995911
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||||||||||||  || |||| ||||||||||||||||||||    
T  17995850 gcttaaatatgattttcgtccctgtaatttgggtcaattttgattttcgtccctgtaaaaaa 17995911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 37796598 - 37796651
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct 233  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||||||    
T  37796598 gcttaaatatgataatcgtccctgtaatttgggtcagttttgattttcgtccct 37796651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 21984874 - 21984920
Alignment:
Q  195 tcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  21984874 tcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 21984920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 40193861 - 40193943
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt-aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| ||||| |||||||||||  || |||| |||||||| ||||| |||||| |||||||||| ||| ||||    
T  40193861 gcttaaatatgataatcgtcgctgtaatttgggtcaattttgattttcgttcctgtaaaaaaaaactttgaaatacattcctg 40193943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 789299 - 789360
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||||||||||||  ||||||| |||||| ||||| |||||||    
T  789299 gcttaaatatgattttcgtccctgtaatttgggtcagttttgattttcatccctctaaaaaa 789360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 26829674 - 26829629
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattt 225  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||    
T  26829674 gcttaaatatgataatcgtccctgtaatttagtccagttttgattt 26829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 32497001 - 32497062
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | || ||||||||||||  ||||||| |||||| |||||||||||||    
T  32497001 gcttaaatatgataattgttcctgtaatttgggtcagttttgattttcatccctgtaaaaaa 32497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 42276530 - 42276591
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||| ||||||||| | || ||||| ||||||||||||||||||||    
T  42276530 gcttaaatatgattttcgtctctgtaatttagacccgttttgattttcgtccctgtaaaaaa 42276591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 47723536 - 47723476
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||| |||||||| |||||||| |||||||| |||||||||||    
T  47723536 gcttaaatatgattttcgtccctataatttggaccagttttgattttcgt-cctgtaaaaaa 47723476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 46196794 - 46196746
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtc 230  Q
    |||||||||||| |||||||||||||||||||||  ||| |||||||||    
T  46196794 ttaaatatgataatcgtccctgtaatttggtccaaattttattttcgtc 46196746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 7945334 - 7945395
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  | ||||||||||||||||| |  ||||| |||||||||| |||||||||    
T  7945334 gcttaaatatgcaattcgtccctgtaatttggacacgttttgattttcgtccttgtaaaaaa 7945395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23966316 - 23966377
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  23966316 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 23966377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 26585475 - 26585536
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | ||||||||||||| |  | ||||| | ||||||||||||||||||    
T  26585475 gcttaaatatgatattagtccctgtaatttaggtcggttttgaatttcgtccctgtaaaaaa 26585536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 28762976 - 28763037
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||    ||||| | ||||||||||||||||||    
T  28762976 gcttaaatatgatattagtccctgtaatttgggttggttttgaatttcgtccctgtaaaaaa 28763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 34458908 - 34458851
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa 237  Q
    |||||||||||||| || || || ||||||||| || |||| ||||||||||||||||    
T  34458908 gcttaaatatgataatcatctctataatttggttcaattttgattttcgtccctgtaa 34458851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 35088374 - 35088435
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||  | ||||||||  ||||||| ||||||||||||||||||||    
T  35088374 gcttaaatatgattttcgtcattataatttggatcagttttgattttcgtccctgtaaaaaa 35088435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 16779849 - 16779769
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaa-aaaatactttgaaatgcatccctg 261  Q
    |||||||||||| | |||| ||||||||||  | ||||| | |||||||||||||| |||| |||||||| | ||||||||    
T  16779849 ttaaatatgatattagtccttgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctg 16779769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 34978403 - 34978483
Alignment:
Q  24 ccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgcccttt 104  Q
    |||| |||||||||||||||||| |||   ||||  || ||| |||||||||||| ||||||| |||||||| ||| ||||    
T  34978403 ccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttaaaatatcattgctcttt 34978483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 544343 - 544422
Alignment:
Q  183 taaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccct 260  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  |||||| |||||||||| |||||||    
T  544343 taaatatgataatcgtctctgtaatttggtccagttttgattttcgtccctgtaaaaaaaaaactttgaaatacatccct 544422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 3184691 - 3184765
Alignment:
Q  186 atatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccct 260  Q
    |||||||| ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||| |||||||    
T  3184691 atatgataatcgtccctgtaatttggacaagttttgattttcgtccctgtaaaaaaaaatttgaaatacatccct 3184765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 1175161 - 1175100
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  ||||||||||||||||| || ||||| |||||| |||||||||||||    
T  1175161 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcatccctgtaaaaaa 1175100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 476922 - 476983
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  | ||||||||||||||| || ||||| ||||||||||||||||||||    
T  476922 gcttaaatatcatttttgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 476983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 477708 - 477647
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||||||||||||||||||    
T  477708 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaa 477647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 8645420 - 8645486
Alignment:
Q  29 acctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 95  Q
    |||||||||||||||||| |||   ||||  || ||| |||||||||||| ||||||||||||||||    
T  8645420 acctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatca 8645486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 9699198 - 9699153
Alignment:
Q  196 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  9699198 cgtccctgtaatttgggctaattttgattttcgtccctgtaaaaaa 9699153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 24051256 - 24051317
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  24051256 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 24051317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 29979283 - 29979222
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  29979283 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 29979222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 31170213 - 31170274
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||| ||||   |||||||||||||||  | ||||||| ||||||||||||||||||    
T  31170213 gcttaaataagatatcagtccctgtaatttggatcggttttaaatttcgtccctgtaaaaaa 31170274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 32403976 - 32404037
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  | ||||||||||||||| ||| |||| ||||||||||| ||| ||||    
T  32403976 gcttaaatatgatttttgtccctgtaatttggaccacttttgattttcgtccccgtagaaaa 32404037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 2812554 - 2812494
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||  |||||||| |||||| |  ||||||| |||||||||| |||||||||    
T  2812554 cttaaatatgattttcgtccctataatttagatcagttttgattttcgtccttgtaaaaaa 2812494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 29145295 - 29145212
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||  |||||| |||||||||| ||||||||    
T  29145295 gcttaaatatgataatcgtccctgtaatttggtcaaattttgattttcgtccctgtgaaaaaaaaactttgaaatacatccctg 29145212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 41262302 - 41262232
Alignment:
Q  31 ctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatcaatgccc 101  Q
    |||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||| || |||||    
T  41262302 ctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaaggttgttcaaataacattgccc 41262232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2004157 - 2004085
Alignment:
Q  20 tgtaccaccacctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaata 92  Q
    |||| ||| |||||||||||||| ||||||| |||||| ||||||| | ||||||||||||||||||||||||    
T  2004157 tgtatcactacctaaatttctttatattatttgattgtctaataggttatcacaagaaaaggttgttcaaata 2004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 29144907 - 29144824
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgt--aaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| |||||||||||||||| || | |||| ||||||||||||||  |||||| |||||||||| ||||||||    
T  29144907 gcttaaatatgataatcgtccctgtaatttgatcaaattttgattttcgtccctgtgaaaaaaaaactttgaaatacatccctg 29144824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 9170744 - 9170666
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||| |||| | |||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||    
T  9170744 ttaaatatgataatcgttcttgtattttggtccagttttgattttcgtccctgtaaaaaa-actttgaaatacattcctg 9170666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 54110539 - 54110480
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||    
T  54110539 ttaaatatgataatcgtccctgtaatttgtttcagttttgattttcgtccctgtaaaaaa 54110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 39263626 - 39263688
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||||||||||    
T  39263626 agcttaaatatgattttcgtccctgtaatttggaccagttttgattttcgttcctgtaaaaaa 39263688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 865416 - 865477
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| || ||||||||||||||  ||||||| ||||||||||||||||||||    
T  865416 gcttaaatatgataatcatccctgtaatttgggtcagttttgattttcgtccctgtaaaaaa 865477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 29517892 - 29517831
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||| ||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||    
T  29517892 gctttaatatgataatcgtccctgtaatttggttcaattttgattttcgtccctgtaaaaaa 29517831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 866328 - 866269
Alignment:
Q  182 ttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||| ||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  866328 ttaaatatgataatcgtccctgtaatttagtctagttttgattttcgtccttgtaaaaaa 866269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 572229 - 572176
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct 233  Q
    |||||||||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  572229 gcttaaatatgataattgtccctataatttggtccagttttgattttcgtccct 572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 24573729 - 24573810
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 261  Q
    ||||||||||||||   ||| |||||||||||||||||||| |||||||| | ||||||||| |  ||||||| ||||||||    
T  24573729 gcttaaatatgataactgtctctgtaatttggtccagttttgattttcgtacgtgtaaaaaaaaaattgaaatacatccctg 24573810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 44876066 - 44876147
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaatactttgaaatgcatccctg 261  Q
    |||||||||||||| | || | ||||||||||  |||||||  ||||||| ||||||||||| |||||||||| ||||||||    
T  44876066 gcttaaatatgataattgttcttgtaatttgggtcagttttgcttttcgttcctgtaaaaaaaactttgaaatacatccctg 44876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 48614226 - 48614275
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtc 230  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  48614226 cttaaatatgataatcgtccgtgtaaattggtccagttttaattttcgtc 48614275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 48615278 - 48615217
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||| |||||||||| | |||||| |||||| |||||||||||||    
T  48615278 gcttaaatatgatattcgtccatgtaatttggacgagttttgattttcatccctgtaaaaaa 48615217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 53535657 - 53535596
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  53535657 gcttaaatatcattttcgtccctgtaatttgggcccgttttgattttcgtccctgtaaaaaa 53535596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 42712189 - 42712130
Alignment:
Q  183 taaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccct-gtaaaaaa 241  Q
    |||||||||||||||||| |||||||||| |||||||| ||||| |||||| ||||||||    
T  42712189 taaatatgatagtcgtccttgtaatttggaccagttttgatttttgtccctagtaaaaaa 42712130  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 12658385 - 12658447
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtcca-gttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||| |||||||||| |||  |||| ||||||||||||||||||||    
T  12658385 gcttaaatatgataatcgtccatgtaatttgggccatttttttattttcgtccctgtaaaaaa 12658447  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 54109498 - 54109559
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||| |||||||||||||||  ||||||||| ||||||  ||||||||||||    
T  54109498 agcttaaatatgataatcgtccctgtaatttactccagttttgattttc-accctgtaaaaaa 54109559  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 6056410 - 6056471
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||| |||||||| |||||| |  ||||||| ||||||||| ||||||||||    
T  6056410 gcttaaatatgataatcgtccctataatttagggcagttttgattttcgtcactgtaaaaaa 6056471  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 38657828 - 38657889
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||||||||||||||    ||||| ||||||||||||||||||||    
T  38657828 gcttaaatatgattttcgtccctgtaatttgggttcgttttgattttcgtccctgtaaaaaa 38657889  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 51162970 - 51162909
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||  |||||| ||||||||||  | ||||| ||||||||||||||||||||    
T  51162970 gcttaaatatgattttcgtccttgtaatttgggtccgttttgattttcgtccctgtaaaaaa 51162909  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 11701736 - 11701680
Alignment:
Q  185 aatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||| ||| ||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  11701736 aatattataatcgtccctgtaatttggaccagttttgattttcgtccatgtagaaaa 11701680  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 6711172 - 6711118
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctg 234  Q
    |||||||||||||  | ||||||||||||||| |||||||| | |||||||||||    
T  6711172 gcttaaatatgatttttgtccctgtaatttggaccagttttgaatttcgtccctg 6711118  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 50064731 - 50064669
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||  | ||||||||||||||||| |  ||||| |||||||||| |||||||||    
T  50064731 agcttaaatatgcaattcgtccctgtaatttgggcgcgttttgattttcgtccttgtaaaaaa 50064669  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 15807657 - 15807718
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  15807657 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 15807718  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 47864490 - 47864551
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  47864490 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 47864551  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 5386486 - 5386550
Alignment:
Q  31 ctaaatttctttgtattattagattgtttaatagggtgtcacaagaaaaggttgttcaaatatca 95  Q
    |||||||||||||||| |||   |||| ||| | | |||||||||||| ||||||||||||||||    
T  5386486 ctaaatttctttgtataatttagttgtctaaaaagttgtcacaagaaatggttgttcaaatatca 5386550  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 38658558 - 38658498
Alignment:
Q  181 cttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||| | |||||||||||||||  | ||||| | |||||||| |||||||||    
T  38658558 cttaaatatgatattagtccctgtaatttggatcggttttgaatttcgtccttgtaaaaaa 38658498  T

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Target: scaffold0785 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 1630 - 1568
Alignment:
Q  179 agcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    ||||||||||||||| | |||||||||||||||  | ||||| | |||||||| |||||||||    
T  1630 agcttaaatatgatattagtccctgtaatttggatcggttttgaatttcgtccgtgtaaaaaa 1568  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 135484 - 135566
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaata-ctttgaaatgcatccctg 261  Q
    |||||||||||||| | |||||||||||||||  | ||||| | ||| |||||||||||||| | ||||||| | ||||||||    
T  135484 gcttaaatatgatattagtccctgtaatttgggtcggttttgaattttgtccctgtaaaaaaaatctttgaattacatccctg 135566  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 28284 - 28345
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||| ||  ||||||| |||||||||  | ||||| ||||||||||||||||||||    
T  28284 gcttaaatatcattttcgtccccgtaatttggatccgttttgattttcgtccctgtaaaaaa 28345  T

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Target: scaffold0141 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 10307 - 10368
Alignment:
Q  180 gcttaaatatgatagtcgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||  |  |||||||||||||||| | | |||| ||||||||||||||||||||    
T  10307 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 10368  T

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Target: scaffold0141; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 11180 - 11135
Alignment:
Q  196 cgtccctgtaatttggtccagttttaattttcgtccctgtaaaaaa 241  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||    
T  11180 cgtccctgtaatttgggcgaattttgattttcgtccctgtaaaaaa 11135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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