View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_35 (Length: 277)
Name: NF7489_low_35
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_35 |
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| [»] scaffold0881 (1 HSPs) |
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Alignment Details
Target: scaffold0881 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0881
Description:
Target: scaffold0881; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 2931 - 2683
Alignment:
| Q |
13 |
aatatcagatattgagtttgatttccacttataaaaaatatgtttctttcttgcaggaaaatatagccatgcctgaggttacagatgtccttaaagacaa |
112 |
Q |
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| T |
2931 |
aatatcagatattgagtttgatttccacttataaaaaatatgtttttttcttgcaggaaaatatagccatgcctgaggttacagatgtccttaaagacaa |
2832 |
T |
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| Q |
113 |
actacctaatgtgggaaatgcaaatggcttgattggtcactctatactttttaaggcaactcgtggaattggggaagaagaggtgaaattcgaaaagcgg |
212 |
Q |
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| T |
2831 |
actacctaatgtgggaaatgcaaatggcttgattggtcactctatactttttaaggcaactcgtggaattggggaagaagaggtgaaattcgaaaagcgg |
2732 |
T |
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| Q |
213 |
ataagtagaaaaagtaaaccccaaaagaagagggatcccaagaaaagga |
261 |
Q |
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| T |
2731 |
ataagtagaaaaagtaaaccccaaaagaagagggatcccaagaaaagga |
2683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 8731182 - 8731365
Alignment:
| Q |
78 |
gccatgcctgaggttacagatgtccttaaagacaaactacctaatgtgggaaatgcaaatggcttgattggtcactctatactttttaaggcaactcgtg |
177 |
Q |
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| T |
8731182 |
gccatgcatgaggttacagagatccgtaaagacaaactacctaatatggaaaattcaaatggcttgaagtgtccctctatactttttgaagaaactcttg |
8731281 |
T |
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| Q |
178 |
gaattggggaagaagaggtgaaattcgaaaagcggataagtagaaaaagtaaaccccaaaagaagagggatcccaagaaaagga |
261 |
Q |
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| T |
8731282 |
cagttagtgaagaagaggtgaaattcgaaaagcagagcagtagaacaattagaccccaaaagaagatggatcccaagaaaagga |
8731365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 8711283 - 8711444
Alignment:
| Q |
100 |
tccttaaagacaaactacctaatgtgggaaatgcaaatggcttgattggtcactctatactttttaaggcaactcgtggaattggggaagaagaggtgaa |
199 |
Q |
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| T |
8711283 |
tccttaaagacaaactaccaaatgtggaaacttcaaatggcatgaagggtcactctatactttttgaagaaagtcatgcaattagtgaagaagaggtgaa |
8711382 |
T |
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| Q |
200 |
attcgaaaagcggataagtagaaaaagtaaaccccaaaagaagagggatcccaagaaaagga |
261 |
Q |
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| T |
8711383 |
atttgaaaaacggagcagtggaaaaagtagtccccaaaagaagatggatcccaagagaagga |
8711444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 8724612 - 8724737
Alignment:
| Q |
136 |
atggcttgattggtcactctatactttttaaggcaactcgtggaattggggaagaagaggtgaaattcgaaaagcggataagtagaaaaagtaaacccca |
235 |
Q |
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| T |
8724612 |
atggcttgaagggtcactctatactttttgaagaaagtcatgcaattagtgaagaagaggtgaaattcgaaaagcggagcagtggaaaaagcagacccca |
8724711 |
T |
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| Q |
236 |
aaagaagagggatcccaagaaaagga |
261 |
Q |
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| T |
8724712 |
aaagaagatggatcccaagagaagga |
8724737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 8731087 - 8731134
Alignment:
| Q |
29 |
tttgatttccacttataa-aaaatatgtttctttcttgcaggaaaata |
75 |
Q |
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| T |
8731087 |
tttgatttccagttataacaaaatatgtttctttcttgcaggaaaata |
8731134 |
T |
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