View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_low_39 (Length: 251)

Name: NF7489_low_39
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_low_39
NF7489_low_39
[»] chr4 (3 HSPs)
chr4 (6-167)||(22022333-22022494)
chr4 (164-207)||(16499114-16499157)
chr4 (150-199)||(35368336-35368385)
[»] chr2 (3 HSPs)
chr2 (152-207)||(25332393-25332448)
chr2 (147-208)||(25331915-25331976)
chr2 (147-207)||(17768412-17768472)
[»] chr3 (2 HSPs)
chr3 (147-208)||(32998933-32998994)
chr3 (156-208)||(49976884-49976936)
[»] scaffold0421 (1 HSPs)
scaffold0421 (163-208)||(7286-7331)
[»] chr8 (4 HSPs)
chr8 (163-208)||(13544547-13544592)
chr8 (163-208)||(13545201-13545246)
chr8 (163-208)||(13679227-13679272)
chr8 (163-208)||(13679881-13679926)
[»] chr6 (1 HSPs)
chr6 (163-208)||(33771447-33771492)
[»] chr5 (1 HSPs)
chr5 (147-207)||(41696071-41696131)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 22022494 - 22022333
Alignment:
Q  6 tttcacgattatcgattttgttatgagaggttgaaatatggtatgtcaatttgtgtttaagaccatcccttgtgatgtgtaacttttgtgttaaattgca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022494 tttcacgattatcgattttgttatgagaggttgaaatatggtatgtcaatttgtgtttaagaccatcccttgtgatgtgtaacttttgtgttaaattgca 22022395  T
Q  106 taatataaatgtgttgatgatatatgttgtttgttgcttgagtccaattcttatttagtgtg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022394 taatataaatgtgttgatgatatatgttgtttgttgcttgagtccaattcttatttagtgtg 22022333  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 16499157 - 16499114
Alignment:
Q  164 tgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 207  Q
    ||||||||||||||||||  |||||||||||||||| |||||||    
T  16499157 tgtgttaaaagagagtgttagtgggtgtgaccctagcatttctc 16499114  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 35368385 - 35368336
Alignment:
Q  150 caattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctag 199  Q
    ||||| |||||| ||||||||||||| |||||| |||| |||||||||||    
T  35368385 caatttttatttggtgtgttaaaagaaagtgtcagtggatgtgaccctag 35368336  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 25332393 - 25332448
Alignment:
Q  152 attcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 207  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  25332393 attcttatttagtgtgttaaaagagagtgttcgtgggtgtgatcctagcatttctc 25332448  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 25331976 - 25331915
Alignment:
Q  147 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||| |||||  ||||| |||||||||||||  |||||||||||||||| ||||||||    
T  25331976 gtccaatttttattgggtgtgctaaaagagagtgttagtgggtgtgaccctagcatttctct 25331915  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 17768472 - 17768412
Alignment:
Q  147 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 207  Q
    |||||| |||||||| |||||||||||||||||||  |||| ||| ||||||| |||||||    
T  17768472 gtccaactcttatttggtgtgttaaaagagagtgttagtggatgtcaccctagtatttctc 17768412  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 32998994 - 32998933
Alignment:
Q  147 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||| |||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  32998994 gtccaatttttatttggtgtgttaaaagagagtgctagtgggtgtgaccctagcatttctct 32998933  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 49976936 - 49976884
Alignment:
Q  156 ttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    ||||| ||||||||||||||| ||||  ||||||||||| |||| ||||||||    
T  49976936 ttattgagtgtgttaaaagagtgtgttagtgggtgtgacactagcatttctct 49976884  T

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Target: scaffold0421 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 7286 - 7331
Alignment:
Q  163 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||||||||||||||  |||| ||||||||||| ||||||||    
T  7286 gtgtgttaaaagagagtgttagtggatgtgaccctagcatttctct 7331  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 13544592 - 13544547
Alignment:
Q  163 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  13544592 gtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctct 13544547  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 13545201 - 13545246
Alignment:
Q  163 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  13545201 gtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctct 13545246  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 13679272 - 13679227
Alignment:
Q  163 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  13679272 gtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctct 13679227  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 13679881 - 13679926
Alignment:
Q  163 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  13679881 gtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctct 13679926  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 33771447 - 33771492
Alignment:
Q  163 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 208  Q
    |||||||||||||| ||||  |||||||||||||||| ||||||||    
T  33771447 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 33771492  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 41696131 - 41696071
Alignment:
Q  147 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 207  Q
    |||||||||| |||| |||||||||||||||||||  |||| || || ||||| |||||||    
T  41696131 gtccaattctgatttggtgtgttaaaagagagtgttagtggctgcgatcctagcatttctc 41696071  T

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