View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_41 (Length: 250)
Name: NF7489_low_41
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 5988951 - 5988716
Alignment:
| Q |
13 |
aatatgcaaagcagccttttaaaggagtcgaaagatgagagtagctcaatcgtagattagcctgcatcccatgacctatcaacccccaaatgttactttc |
112 |
Q |
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| T |
5988951 |
aatatgcaaagcagccttttaaaggagtcgaaagatgagagtagctcaattgtagattggcatgcaacccataacctatcaacttcaaaatgttacattc |
5988852 |
T |
|
| Q |
113 |
tagcatataataccagtcatttgaggacaattcggtacggagaagagccccaacttttattgcagctgatggtaatccatcacannnnnnngcaattttc |
212 |
Q |
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| T |
5988851 |
taacacataattccagtcatttggggacaaattggtacggagaagagccccgacttttattgcagctgatggtaatccatcacatttttttgcaattttc |
5988752 |
T |
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| Q |
213 |
ctgccaatttcttctagtttagattgttttaggtcg |
248 |
Q |
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| T |
5988751 |
ctgccaatttcttctagattggattgttttatgtcg |
5988716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 2919953 - 2919770
Alignment:
| Q |
13 |
aatatgcaaagcagccttttaaaggagtcgaaagatgagagtagctcaatcgtagattagcctgcatcccatgacctatcaacccccaaatgttactttc |
112 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || | | ||| | ||||||| ||| ||||||| | | |
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| T |
2919953 |
aatatgcaaagcagcgttttaaaggagtcgaaagatagaagtagctcaattgtagaccggcttggacctcataatctatcaattccccaatgttaactcc |
2919854 |
T |
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| Q |
113 |
tagcatataataccagtcatttgaggacaattcggtacggagaagagccccaacttttattgcagctgatggtaatccatcaca |
196 |
Q |
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| T |
2919853 |
tagcacatacttccagttatctacagacaattcagtatgaagaagagccccaactgatattgcagctaatggtaatccgtcaca |
2919770 |
T |
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