View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7489_low_45 (Length: 241)
Name: NF7489_low_45
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_45 |
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| [»] scaffold0006 (2 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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| [»] scaffold0460 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 208657 - 208511
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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| T |
208657 |
aacatttcttattctcctccaattatacatcttcattaaaaattaaatcaatctattttccactcgccttcgaggttaagatcgaatgattcatctccat |
208558 |
T |
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| Q |
148 |
taaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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| T |
208557 |
taaaatataaatcaattttttcatctcttgtggaatctaaattattc |
208511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 170875 - 170729
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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| T |
170875 |
aacatttcttattctcctccaattattcatcttcattaaaaattaaatcaatctattttccactcgccttcgaggttaagatcaaattattcatctccat |
170776 |
T |
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| Q |
148 |
taaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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| T |
170775 |
taaaatataaatcaattttttcatctcttgtaaaatcaaaattattc |
170729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 50709 - 50564
Alignment:
| Q |
49 |
acatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccatt |
148 |
Q |
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| T |
50709 |
acatttcttattctcctccaattattcatcttcattaaaaattaaatcaatctattttccactcgccttcgaggttaagatcgaatgattcatctccatt |
50610 |
T |
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| Q |
149 |
aaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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|||||| ||||||| ||||||||||||||||||||| ||||||||| |
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| T |
50609 |
aaaataaaaatcaattttttcatctcttgtagaatcaaaattattc |
50564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 20371555 - 20371410
Alignment:
| Q |
49 |
acatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccatt |
148 |
Q |
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| T |
20371555 |
acatttcttattctcctccaattattcatcttcattaaaaattaaatcaatctattttccactcgccttcgaggttaagatcgaatgattcatctccatt |
20371456 |
T |
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| Q |
149 |
aaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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| T |
20371455 |
aaaataaaaatcaattttttcatctcttgtagaatcaaaattattc |
20371410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 20480814 - 20480670
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
20480814 |
aacatttcttattctcctccaattattcatcttcattaaaaattaaatcaatctattttccactcgcctt-gaggttaagatcgaatgattcatctccat |
20480716 |
T |
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| Q |
148 |
taaaatataaatcaaatttttcatctcttgtagaatctaaattatt |
193 |
Q |
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| T |
20480715 |
taaaatataaatcaattttttcatctcttgtagaatcaaaattatt |
20480670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 13673261 - 13673115
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||| |
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| T |
13673261 |
aacatttcttattctcctccaattattcatcttcattaaaaattaaatcaatctattttccactcgccttcgaggttaagatcaaattattcatctccat |
13673162 |
T |
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| Q |
148 |
taaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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||||||||||||||| |||||||||||||||| |||| ||||||||| |
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| T |
13673161 |
taaaatataaatcaattttttcatctcttgtaaaatcaaaattattc |
13673115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 13589823 - 13589713
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||| | |
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| T |
13589823 |
aacatttcttattctcctccaattattcatcttcattaaaaattaaatcaatttattttccactcgtcttcgaggttaagatcgaatgattcatctccgt |
13589724 |
T |
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| Q |
148 |
taaaatataaa |
158 |
Q |
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||||||||||| |
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| T |
13589723 |
taaaatataaa |
13589713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 966 - 820
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
966 |
aacatttcttattctcctccaattattcatcttcattaaaaattaaatcaatcaattttccactcgccttcgaggttaagatcgaatgattcatctccat |
867 |
T |
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| Q |
148 |
taaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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|||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
866 |
taaaatatgaatcaattttttcatctcttgtagaatcaaaattattc |
820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 118536 - 118390
Alignment:
| Q |
48 |
aacatttcttattctcctccaattattcatcttcgttaaaatttaaataaatctattttccactcgccttcgaggtcaagatcgaatgattcatctccat |
147 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||| |
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| T |
118536 |
aacatttcttattctcctccaattattcatcttcattaaaaattaaatcaatctattttccactcgccttcgaggttaagatctaattattcatctccat |
118437 |
T |
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| Q |
148 |
taaaatataaatcaaatttttcatctcttgtagaatctaaattattc |
194 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
118436 |
taaaatataaatcaattttttcatctcttgttgaatctaaattattc |
118390 |
T |
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