View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7489_low_5 (Length: 715)

Name: NF7489_low_5
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7489_low_5
NF7489_low_5
[»] chr5 (9 HSPs)
chr5 (18-466)||(2016904-2017346)
chr5 (465-689)||(2017973-2018197)
chr5 (250-376)||(25655684-25655809)
chr5 (473-545)||(32389626-32389698)
chr5 (394-458)||(25655821-25655885)
chr5 (490-545)||(18175227-18175282)
chr5 (470-545)||(39147730-39147805)
chr5 (471-532)||(18147719-18147780)
chr5 (481-530)||(28758425-28758474)
[»] chr7 (17 HSPs)
chr7 (470-545)||(30806118-30806193)
chr7 (470-545)||(3392470-3392545)
chr7 (470-545)||(10244881-10244956)
chr7 (470-537)||(41854000-41854067)
chr7 (476-545)||(12935749-12935818)
chr7 (470-510)||(30872025-30872065)
chr7 (465-537)||(32984217-32984289)
chr7 (470-537)||(12640589-12640656)
chr7 (470-537)||(15106691-15106758)
chr7 (470-545)||(45284811-45284886)
chr7 (468-514)||(4611240-4611286)
chr7 (470-512)||(8227349-8227391)
chr7 (470-512)||(21597680-21597722)
chr7 (459-509)||(31170226-31170276)
chr7 (480-514)||(40518912-40518946)
chr7 (465-510)||(29461842-29461887)
chr7 (472-505)||(45329141-45329174)
[»] chr2 (13 HSPs)
chr2 (465-548)||(30392821-30392904)
chr2 (468-542)||(23919472-23919546)
chr2 (470-537)||(14663987-14664054)
chr2 (470-537)||(15233416-15233483)
chr2 (470-509)||(15625345-15625384)
chr2 (470-545)||(23405199-23405274)
chr2 (470-533)||(28202297-28202360)
chr2 (469-510)||(6141219-6141260)
chr2 (476-533)||(9375104-9375161)
chr2 (469-510)||(12413492-12413533)
chr2 (469-510)||(12425552-12425593)
chr2 (469-510)||(29734690-29734731)
chr2 (480-533)||(33424323-33424376)
[»] chr1 (13 HSPs)
chr1 (465-543)||(31401239-31401317)
chr1 (480-532)||(4865827-4865879)
chr1 (470-532)||(10292936-10292998)
chr1 (480-545)||(11333677-11333742)
chr1 (480-545)||(11491698-11491763)
chr1 (465-537)||(15775737-15775809)
chr1 (490-545)||(3229706-3229761)
chr1 (470-537)||(6702579-6702646)
chr1 (470-537)||(14519323-14519390)
chr1 (470-545)||(36666568-36666643)
chr1 (470-512)||(41573288-41573330)
chr1 (481-514)||(17517027-17517060)
chr1 (475-516)||(48145125-48145166)
[»] chr4 (18 HSPs)
chr4 (480-545)||(49056788-49056853)
chr4 (465-537)||(9661548-9661620)
chr4 (469-529)||(21442637-21442697)
chr4 (470-545)||(27091464-27091539)
chr4 (467-537)||(46582634-46582704)
chr4 (469-514)||(35851724-35851769)
chr4 (470-545)||(37310030-37310105)
chr4 (470-545)||(40051625-40051700)
chr4 (470-533)||(50376653-50376716)
chr4 (470-537)||(53572327-53572394)
chr4 (480-537)||(1458018-1458075)
chr4 (480-545)||(22433363-22433428)
chr4 (480-545)||(30057235-30057300)
chr4 (480-545)||(32339337-32339402)
chr4 (251-321)||(35752640-35752706)
chr4 (481-545)||(38433322-38433386)
chr4 (480-545)||(41137912-41137977)
chr4 (470-543)||(52699192-52699265)
[»] chr8 (7 HSPs)
chr8 (465-525)||(20872470-20872530)
chr8 (471-545)||(12770372-12770446)
chr8 (467-532)||(23435238-23435303)
chr8 (475-539)||(12510433-12510497)
chr8 (470-537)||(42880951-42881018)
chr8 (471-545)||(11231424-11231498)
chr8 (469-510)||(24696027-24696068)
[»] chr6 (11 HSPs)
chr6 (470-545)||(2488878-2488953)
chr6 (465-509)||(28957104-28957148)
chr6 (473-525)||(30527768-30527820)
chr6 (473-512)||(10999153-10999192)
chr6 (469-532)||(24623316-24623379)
chr6 (470-537)||(30938391-30938458)
chr6 (469-512)||(33608336-33608379)
chr6 (470-512)||(16453356-16453398)
chr6 (469-510)||(2692214-2692255)
chr6 (467-512)||(14945532-14945577)
chr6 (480-537)||(27218897-27218954)
[»] chr3 (10 HSPs)
chr3 (470-545)||(52309102-52309177)
chr3 (470-512)||(31085008-31085050)
chr3 (467-545)||(53432729-53432807)
chr3 (470-510)||(12976623-12976663)
chr3 (470-545)||(4227736-4227811)
chr3 (470-512)||(7827508-7827550)
chr3 (470-512)||(7829896-7829938)
chr3 (480-514)||(35718579-35718613)
chr3 (471-545)||(49443415-49443489)
chr3 (467-516)||(48251572-48251621)
[»] scaffold0330 (1 HSPs)
scaffold0330 (480-545)||(6781-6846)
[»] scaffold0445 (1 HSPs)
scaffold0445 (470-537)||(4014-4081)
[»] scaffold0519 (1 HSPs)
scaffold0519 (471-545)||(2954-3028)
[»] scaffold0012 (1 HSPs)
scaffold0012 (471-537)||(122550-122616)
[»] scaffold0031 (1 HSPs)
scaffold0031 (465-514)||(50024-50073)


Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 2016904 - 2017346
Alignment:
Q  18 ttaatgacttggtgtaaggtttaaggcttcgccatgttgtttgcattctatttcaaatatctcatttgttggtgcaaattaactgcaatgttaacttgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016904 ttaatgacttggtgtaaggtttaaggcttcgccatgttgtttgcattctgtttcaaatatctcatttgttggtgcaaattaactgcaatgttaacttgtc 2017003  T
Q  118 tgtcttctactcacattgataaattcctcagagccaaatttttacacagaatggttatatgccaatattgataaacttacaacatcattaacagcaaaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2017004 tgtcttctactcacattgataaattcctcagagccaaatttttacacagaatggttatataccaatattgataaacttacaacatcattaacagcaaaag 2017103  T
Q  218 aataagctggattgatagatgatgacgataattttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacaggag 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2017104 aataagctggattgatagatgatgacgataa-tttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacatgag 2017202  T
Q  318 tgattttactcgggcatgtggtttctctactagactatttctcattatcctctttgaattnnnnnnnnnnnnnccagaaaggattaattctaagttggca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||    
T  2017203 tgattttactcgggcatgtggtttctctactagactatttctcatcatcctctttgaatt-----aaaaaaacccagaaaggattaattctaagttggca 2017297  T
Q  418 cacaaaattttggaagatttgagaagctaggaatgtgataagctggttt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017298 cacaaaattttggaagatttgagaagctaggaatgtgataagctggttt 2017346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 465 - 689
Target Start/End: Original strand, 2017973 - 2018197
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccacttgtta-tttaagtctccctg 563  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||    
T  2017973 ttcctgtgagtttatctcagttgatagggacattgtataatatatgtagaagacggagttctaaccc-agacatcccacttgttactttaagtctccttg 2018071  T
Q  564 acccaataaaaaatataaaatactctcctacgatttatgtttgaactaagaaattgaactaaaaaatctcacttcttatcccataattcataccaattaa 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018072 acccaataaaaaatataaaatactctcctacgatttatgtttgaactaagaaattgaactaaaaaatctcacttcttatcccataattcataccaattaa 2018171  T
Q  664 gttctataaccctccacaaacaccat 689  Q
    ||||||||||| ||||||||||||||    
T  2018172 gttctataaccttccacaaacaccat 2018197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 25655684 - 25655809
Alignment:
Q  250 tttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacaggagtgattttactcgggcatgtggtttctctacta 349  Q
    ||||||||||| | ||| ||||||  |||||||||  ||||| ||||| |||||||||||||   ||| ||||||| || || || |||| ||||| |||    
T  25655684 tttgttttgtaaaagtagttttgtcagaaaggtttagtattcaattttcaagtggattggaatgagagcgatttta-tctgggatatggtctctcttcta 25655782  T
Q  350 gactatttctcattatcctctttgaat 376  Q
    |||||||| |||| |||||||||||||    
T  25655783 gactatttttcatcatcctctttgaat 25655809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 545
Target Start/End: Complemental strand, 32389698 - 32389626
Alignment:
Q  473 agtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||| |||||||| ||| || |||||||| |||||||||||| |||||||||||  ||||||| |||||||    
T  32389698 agtttagctcagttggtagagatattgcatattatatgtaggagtcggagttcaaattccagacaccccactt 32389626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 458
Target Start/End: Original strand, 25655821 - 25655885
Alignment:
Q  394 gaaaggattaattctaagttggcacacaaaattttggaagatttgagaagctaggaatgtgataa 458  Q
    |||| ||||||||||||  |||||||||| | |||||||||||||||||| ||| |||| |||||    
T  25655821 gaaatgattaattctaatctggcacacaacaatttggaagatttgagaagttagaaatgagataa 25655885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 545
Target Start/End: Original strand, 18175227 - 18175282
Alignment:
Q  490 agggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||| ||||||| |||||||||| | ||| |||| |||||||||||||||||||    
T  18175227 agggacgttgcatattatatgtaggggtcggggttcgaaccccagacatcccactt 18175282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 39147730 - 39147805
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||||||||||||| |||| | | |||||| ||||||| ||||  ||||||| ||||||| ||| |||||||    
T  39147730 gtgagtttatctcagttggtaggaatactgcatattatatgttggagctggagttcgaaccccaaacaccccactt 39147805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 18147719 - 18147780
Alignment:
Q  471 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 532  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||||  ||| |||||| ||||    
T  18147719 tgagtttagctcagttgataaggacaatgcataatatatgcaggatccggggttcaaccccc 18147780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 28758474 - 28758425
Alignment:
Q  481 tcagttgatagggacattgcataatatatgtaggagacggagttcaaacc 530  Q
    ||||||| ||||||||||||||||| |||| ||||| ||| |||||||||    
T  28758474 tcagttggtagggacattgcataatttatgcaggagtcggggttcaaacc 28758425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 30806118 - 30806193
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||| |||||||| |||||| |||||||| |||||| ||| | |||||||| |||||| ||||||||||||    
T  30806118 gtgagtttagctcagttggtagggatattgcatattatatgcaggggtcggagttcgaaccccggacatcccactt 30806193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 3392470 - 3392545
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| ||||||||||| ||| |||||||| |||||||||| | ||| |||| ||||||||||| |||||||    
T  3392470 gtgagcttaactcagttgatatggatattgcatattatatgtaggggtcggggttcgaaccccagacaccccactt 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 10244956 - 10244881
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||| |||| |||||||    
T  10244956 gtgagcttagctcagttggtagggatattgcatattatatgtaggagccggggttcgaaccccggacaccccactt 10244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 41854000 - 41854067
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| ||||||||  |||||||||||||||| |||| ||| ||||||||||||||||| ||||    
T  41854000 gtgagcttagctcagttggcagggacattgcataatttatgcaggggacggagttcaaaccccggaca 41854067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 545
Target Start/End: Original strand, 12935749 - 12935818
Alignment:
Q  476 ttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||||||  |||||||||||||||| |||||||| || || |||| ||||||||||  |||||||    
T  12935749 ttatctcagttggcagggacattgcataatttatgtaggggatggggttcgaaccccagacgccccactt 12935818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 30872025 - 30872065
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  30872025 gtgagtttatctcagttggtatggacattgcataatatatg 30872065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 32984289 - 32984217
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    |||||||||| ||| |||||||| |||||| |||||||| |||||  ||||| ||| ||||||||||| ||||    
T  32984289 ttcctgtgagcttagctcagttggtagggatattgcatattatatacaggagtcggggttcaaaccccggaca 32984217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 12640656 - 12640589
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  12640656 gtgagcttagctcagttggtagggatattgcatattatatgcaggagccggggttcgaaccccagaca 12640589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 15106758 - 15106691
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  15106758 gtgagcttaactcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 15106691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 45284886 - 45284811
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| |||||||||||||||||||| ||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  45284886 gtgagcttagctcagttgatagggacattgaataatttatgcaggggtcggggttcgaaccccggacaccccactt 45284811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 4611240 - 4611286
Alignment:
Q  468 ctgtgagtttatctcagttgatagggacattgcataatatatgtagg 514  Q
    ||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  4611240 ctgtgagcttagctcagttggtagggacattgcataatttatgtagg 4611286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 8227349 - 8227391
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  8227349 gtgagtttagctcagttgataaggacaatgcataatatatgta 8227391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 21597680 - 21597722
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  21597680 gtgagcttatctcagttgatatggacaatgcataatatatgta 21597722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 31170276 - 31170226
Alignment:
Q  459 gctggtttcctgtgagtttatctcagttgatagggacattgcataatatat 509  Q
    |||||| | ||||||||||| |||||||||||| || ||||||||||||||    
T  31170276 gctggtattctgtgagtttagctcagttgatagagatattgcataatatat 31170226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 514
Target Start/End: Complemental strand, 40518946 - 40518912
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtagg 514  Q
    |||||||| ||||||||||||||||||||||||||    
T  40518946 ctcagttggtagggacattgcataatatatgtagg 40518912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 29461887 - 29461842
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||||    
T  29461887 ttcccgtgagtttaactcagttggtagggacaatgcataatatatg 29461842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 45329141 - 45329174
Alignment:
Q  472 gagtttatctcagttgatagggacattgcataat 505  Q
    |||||||||||||||| |||||||||||||||||    
T  45329141 gagtttatctcagttggtagggacattgcataat 45329174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 548
Target Start/End: Complemental strand, 30392904 - 30392821
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccacttgtt 548  Q
    ||||| |||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||||||||  |||||||||    
T  30392904 ttcctttgagcttagctcagttggtagggatattgcatattatatgtaggagtcggggttcgaaccccagacactccacttgtt 30392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 542
Target Start/End: Complemental strand, 23919546 - 23919472
Alignment:
Q  468 ctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatccca 542  Q
    ||||||| ||| |||||||| |||||||||||||||||||||| ||| | ||| |||| || |||||||| ||||    
T  23919546 ctgtgagcttagctcagttggtagggacattgcataatatatggaggggtcggggttcgaatcccagacacccca 23919472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 14663987 - 14664054
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    |||||||||  ||||||| ||||||||||||||||| |||| ||| | | ||||||||||||| ||||    
T  14663987 gtgagtttagttcagttggtagggacattgcataatttatgcaggggccagagttcaaaccccggaca 14664054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 15233416 - 15233483
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||| ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  15233416 gtgagcttagctcaattggtagggatattgcatattatatgcaggggccggagttcaaaccccagaca 15233483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 509
Target Start/End: Complemental strand, 15625384 - 15625345
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatat 509  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  15625384 gtgagtttagctcaattgatagggacattgcataatatat 15625345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 23405199 - 23405274
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| |||||||| |||||||||||||||||||||| ||| | ||| |||| |||||  |||| |||||||    
T  23405199 gtgagcttagctcagttggtagggacattgcataatatatgcaggggtcggggttcgaaccctggacaccccactt 23405274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 533
Target Start/End: Original strand, 28202297 - 28202360
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 533  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |   || |||||||||||||    
T  28202297 gtgagcttagctcagttgatagggacaatgcataatatatgtaaggtccgaagttcaaacccca 28202360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 6141219 - 6141260
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    ||||||||||||||||||| || ||||| |||||||||||||    
T  6141219 tgtgagtttatctcagttggtaaggacaatgcataatatatg 6141260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 9375161 - 9375104
Alignment:
Q  476 ttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 533  Q
    ||||||||||||  ||| ||||||||||||||||||||| | ||| |||| |||||||    
T  9375161 ttatctcagttggcaggaacattgcataatatatgtaggggtcggggttcgaacccca 9375104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 12413492 - 12413533
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  12413492 tgtgagtttatctcggttgataaggacaatgcataatatatg 12413533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 12425552 - 12425593
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  12425552 tgtgagtttatctcggttgataaggacaatgcataatatatg 12425593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 29734690 - 29734731
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  29734690 tgtgagtttagctcagttgatatggacaatgcataatatatg 29734731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 533
Target Start/End: Complemental strand, 33424376 - 33424323
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 533  Q
    |||| |||||||||||| ||||||||||||| | ||  ||||||||||||||||    
T  33424376 ctcaattgatagggacagtgcataatatatgcaagattcggagttcaaacccca 33424323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 543
Target Start/End: Complemental strand, 31401317 - 31401239
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccac 543  Q
    |||| ||||| ||| |||||||||||||||||||||||||| |||| ||||| ||  ||||||||||| |||| |||||    
T  31401317 ttcccgtgagcttagctcagttgatagggacattgcataatttatgcaggagccgaggttcaaaccccggacaccccac 31401239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 532
Target Start/End: Complemental strand, 4865879 - 4865827
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 532  Q
    |||||||| |||||||||||||||||||||||||| | |||||||| ||||||    
T  4865879 ctcagttggtagggacattgcataatatatgtaggggtcggagttcgaacccc 4865827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 10292936 - 10292998
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 532  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| | ||||| ||| |||||||    
T  10292936 gtgagcttaactcagttgatagggacaatgcataatatatgtaagggacggggtttaaacccc 10292998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 11333677 - 11333742
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  11333677 ctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 11333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 11491698 - 11491763
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  11491698 ctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 11491763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 15775737 - 15775809
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    |||| ||||| ||| |||| ||| |||||| |||||||| |||||| ||||| |||||||| |||||||||||    
T  15775737 ttcccgtgagcttaactcaattggtagggatattgcatattatatgcaggagccggagttcgaaccccagaca 15775809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 545
Target Start/End: Complemental strand, 3229761 - 3229706
Alignment:
Q  490 agggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||| |||||||||||||||||| |  || ||||||||||| ||||||||||||    
T  3229761 agggacgttgcataatatatgtaggggttggggttcaaaccccggacatcccactt 3229706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 6702579 - 6702646
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  6702579 gtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 6702646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 14519323 - 14519390
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||||||||||||||||||||||| ||| |||| |||||  ||||| ||| |||| | |||||||||    
T  14519323 gtgagtttatctcagttgatagggatattccatattatattcaggagtcggggttcgagccccagaca 14519390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 36666643 - 36666568
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  36666643 gtgagcttagctcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 36666568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Complemental strand, 41573330 - 41573288
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  41573330 gtgagtttaactcagttggtagggacaatgcataatatatgta 41573288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 514
Target Start/End: Complemental strand, 17517060 - 17517027
Alignment:
Q  481 tcagttgatagggacattgcataatatatgtagg 514  Q
    |||||||||||||||||| |||||||||||||||    
T  17517060 tcagttgatagggacattacataatatatgtagg 17517027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 516
Target Start/End: Complemental strand, 48145166 - 48145125
Alignment:
Q  475 tttatctcagttgatagggacattgcataatatatgtaggag 516  Q
    ||||||||||||| ||||||||||| |||||||| |||||||    
T  48145166 tttatctcagttggtagggacattgtataatataggtaggag 48145125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 49056788 - 49056853
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| ||||||||||||||| |||||| ||||| |||||||| |||||| |||| |||||||    
T  49056788 ctcagttggtagggacattgcatattatatgcaggagccggagttcgaaccccggacaccccactt 49056853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 9661548 - 9661620
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    |||| |||||||||||||||||| || ||| |||||||| |||||||| ||| |||||||| |||||| ||||    
T  9661548 ttcccgtgagtttatctcagttggtatggatattgcatattatatgtaagagtcggagttcgaaccccggaca 9661620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 529
Target Start/End: Complemental strand, 21442697 - 21442637
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaac 529  Q
    |||||||||| ||||||||||||||||||||||||||| | | ||||| |||| |||||||    
T  21442697 tgtgagtttaactcagttgatagggacattgcataatagaggaaggagtcggaattcaaac 21442637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 27091539 - 27091464
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||| |||||||| ||||||||||| ||||| | || ||| | |||||||| |||||| ||||||||||||    
T  27091539 gtgagtttagctcagttggtagggacattgtataatttctgcaggggtcggagttcgaaccccggacatcccactt 27091464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 46582634 - 46582704
Alignment:
Q  467 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    |||||||||||| |||||||| |||||| |||||||| |||||| ||||| ||  |||| |||||||||||    
T  46582634 cctgtgagtttagctcagttggtagggatattgcatattatatgcaggagccgaggttcgaaccccagaca 46582704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 35851769 - 35851724
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatgtagg 514  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35851769 tgtgagcttaactcagttggtagggacattgcataatatatgtagg 35851724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 37310030 - 37310105
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||| |||||||| || ||| |||||||| |||||||||| |  || |||||||||||  |||||||||||    
T  37310030 gtgagtttaactcagttggtatggatattgcatattatatgtaggggttggggttcaaaccccgtacatcccactt 37310105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 40051625 - 40051700
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||| |  || |||| ||||||||||| |||||||    
T  40051625 gtgagcttagctcagttggtagggatattgcatattatatgtaggggtaggggttcgaaccccagacaccccactt 40051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 533
Target Start/End: Complemental strand, 50376716 - 50376653
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 533  Q
    ||||||||| |||||||| ||| |||||||||||||||||| ||| || || |||| |||||||    
T  50376716 gtgagtttaactcagttggtagagacattgcataatatatgcaggggaaggggttcgaacccca 50376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 53572394 - 53572327
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| ||||||||||||||| |||||||| |||||| ||||| |||  |||||||||| ||||    
T  53572394 gtgagcttaactcagttgatagggatattgcatattatatgcaggagccgggattcaaaccccggaca 53572327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 537
Target Start/End: Complemental strand, 1458075 - 1458018
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||||||||||||| |||||||| |||||| ||||| ||| |||| |||||| ||||    
T  1458075 ctcagttgatagggatattgcatattatatgcaggagccggggttcgaaccccggaca 1458018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 22433428 - 22433363
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||||||| ||||||||||||||||| ||| | | |||||| |||| || |||| ||||||    
T  22433428 ctcagttgataggaacattgcataatatatgaaggggtcagagttcgaacctcaaacattccactt 22433363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 30057235 - 30057300
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| |||||| |||||||| |||||| ||| | ||| ||||||||||| |||| |||||||    
T  30057235 ctcagttggtagggatattgcatattatatgcaggggtcggggttcaaaccccggacaccccactt 30057300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 32339337 - 32339402
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| |||||| |||||||| |||||| | | | ||| |||||||||||||||| |||||||    
T  32339337 ctcagttgttagggatattgcatattatatgcaagggtcggggttcaaaccccagacaccccactt 32339402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 35752706 - 35752640
Alignment:
Q  251 ttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacaggagtgat 321  Q
    |||||||||||||||    |||| |||||| |||||||||| |||||||||||||| |||||  |||||||    
T  35752706 ttgttttgtagatgt----ttgtcggaaagatttgatattcaatttttaagtggatcggaacgtgagtgat 35752640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 545
Target Start/End: Original strand, 38433322 - 38433386
Alignment:
Q  481 tcagttgatagggacattgcataat-atatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||||||| ||| ||||| || ||||||||||| |||||||| ||||||||||| |||||||    
T  38433322 tcagttgatagg-acaatgcattattatatgtaggagtcggagttcgaaccccagacaccccactt 38433386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 41137977 - 41137912
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| |||||||||||||||||||||| ||| |  || |||| |||| |||||| |||||||    
T  41137977 ctcagttggtagggacattgcataatatatgcaggggttggggttcgaaccacagacaccccactt 41137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 543
Target Start/End: Original strand, 52699192 - 52699265
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccac 543  Q
    ||||||||| ||||||||||||| | |||||||| |||||  ||| |  ||||||| |||| ||||||||||||    
T  52699192 gtgagtttaactcagttgataggaatattgcatattatatacaggggttggagttcgaacctcagacatcccac 52699265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 525
Target Start/End: Complemental strand, 20872530 - 20872470
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttc 525  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||| ||| | ||||||||    
T  20872530 ttcctgtgagcttagctcagttgatagggacattgcataatttatgcaggggtcggagttc 20872470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 12770372 - 12770446
Alignment:
Q  471 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||| ||| |||||||||||||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  12770372 tgagcttagctcagttgatagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 12770446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 23435303 - 23435238
Alignment:
Q  467 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 532  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||| |||| ||||||    
T  23435303 cctgtgagcttagctcagttgatagggatattgcatattatatgcaggagccggggttcgaacccc 23435238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 539
Target Start/End: Complemental strand, 12510497 - 12510433
Alignment:
Q  475 tttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatc 539  Q
    |||| |||| || ||||||||||||||||||||||||| | | |||||||| |||| ||||||||    
T  12510497 tttaactcaattaatagggacattgcataatatatgtatgggtcggagttcgaacctcagacatc 12510433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 42880951 - 42881018
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||| ||||    
T  42880951 gtgagcttaactcagttggtagggatattgcatattatatgtaggagccggggttcgaaccccggaca 42881018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 11231424 - 11231498
Alignment:
Q  471 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  11231424 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 11231498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Complemental strand, 24696068 - 24696027
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  24696068 tgtgagattatctcagttgatatggacaatgcataatatatg 24696027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 2488953 - 2488878
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||| |||||||| ||||||||||| ||||| | || ||| | |||||||| |||||| ||||||||||||    
T  2488953 gtgagtttagctcagttggtagggacattgtataatttctgcaggggtcggagttcgaaccccggacatcccactt 2488878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 509
Target Start/End: Original strand, 28957104 - 28957148
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatat 509  Q
    |||||||||||||| |||||||||||  |||||||||||||||||    
T  28957104 ttcctgtgagtttaactcagttgataaagacattgcataatatat 28957148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 30527768 - 30527820
Alignment:
Q  473 agtttatctcagttgatagggacattgcataatatatgtaggagacggagttc 525  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||  |||||||    
T  30527768 agtttatctcaattgatagggatattgcataatatatataggagttggagttc 30527820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 512
Target Start/End: Original strand, 10999153 - 10999192
Alignment:
Q  473 agtttatctcagttgatagggacattgcataatatatgta 512  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  10999153 agtttaactcagttgataaggacattgcataatatatgta 10999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 532
Target Start/End: Complemental strand, 24623379 - 24623316
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 532  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||    
T  24623379 tgtgagtttagctcagttgatatggacaatgcataatatatgtaaggttcggggttcaaacccc 24623316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 30938391 - 30938458
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||||||| |||||||||||||||||||||| |||   ||| |||| |||||||||||    
T  30938391 gtgagcttaactcagttggtagggacattgcataatatatgcagggaccggggttcgaaccccagaca 30938458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 512
Target Start/End: Original strand, 33608336 - 33608379
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    |||||||||||||||||||||| ||||| || ||||||||||||    
T  33608336 tgtgagtttatctcagttgataaggacaatgtataatatatgta 33608379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Complemental strand, 16453398 - 16453356
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    |||||||||||||||||| |||||||| | |||||||||||||    
T  16453398 gtgagtttatctcagttggtagggacaatacataatatatgta 16453356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 2692214 - 2692255
Alignment:
Q  469 tgtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2692214 tgtgagattatctcagttgatatggacaatgcataatatatg 2692255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 512
Target Start/End: Complemental strand, 14945577 - 14945532
Alignment:
Q  467 cctgtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    |||||||| ||| |||||||||||| |||| |||||||||||||||    
T  14945577 cctgtgagcttagctcagttgatagagacagtgcataatatatgta 14945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 27218897 - 27218954
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||||||||||||| |||||||| |||||||||||| |||  ||| |||||| ||||    
T  27218897 ctcagttgatagggatattgcatattatatgtaggagccgggattcgaaccccggaca 27218954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 52309177 - 52309102
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| ||||||||||| |||||||    
T  52309177 gtgagcttaactcagttggtagggatattgcatactatatgcaggagtcggggttcgaaccccagacaccccactt 52309102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 31085008 - 31085050
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  31085008 gtgagtttatctcagttgataaggacagtgcataatatatgta 31085050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 545
Target Start/End: Complemental strand, 53432807 - 53432729
Alignment:
Q  467 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||||||| |||||||| |||||| |||||||| |||||| ||| | ||| |||| |||||| |||| |||||||    
T  53432807 cctgtgagtttaactcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacaccccactt 53432729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 12976663 - 12976623
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatg 510  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12976663 gtgagtttaactcagttgatagggacaatgcataatatatg 12976623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 4227811 - 4227736
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    ||||||||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| ||| || |||| |||||||    
T  4227811 gtgagtttagctcagttggtagggacattgcataatttatgcaggggtcggggttcgaactccggacaccccactt 4227736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 7827508 - 7827550
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  7827508 gtgagtttaactcagttgatatggacaatgcataatatatgta 7827550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 7829896 - 7829938
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgta 512  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  7829896 gtgagtttaactcagttgatatggacaatgcataatatatgta 7829938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 514
Target Start/End: Complemental strand, 35718613 - 35718579
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtagg 514  Q
    |||||||| ||||||||||||||||||||||||||    
T  35718613 ctcagttggtagggacattgcataatatatgtagg 35718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 545
Target Start/End: Complemental strand, 49443489 - 49443415
Alignment:
Q  471 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| |||| |||  |||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  49443489 tgagtttagctcaattggcagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 49443415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 48251572 - 48251621
Alignment:
Q  467 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggag 516  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| |||||    
T  48251572 cctgtgagcttagctcagttgatagggatattgcatattatatgcaggag 48251621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 6781 - 6846
Alignment:
Q  480 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||||||| |||||| |||||||| |||||||||||| ||  |||| ||||||| |||||||||||    
T  6781 ctcagttggtagggatattgcatattatatgtaggagtcgaggttcgaaccccaaacatcccactt 6846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 4081 - 4014
Alignment:
Q  470 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  4081 gtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 4014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 545
Target Start/End: Complemental strand, 3028 - 2954
Alignment:
Q  471 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 545  Q
    |||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  3028 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 2954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 537
Target Start/End: Original strand, 122550 - 122616
Alignment:
Q  471 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 537  Q
    |||||||| || ||||| |||| |||||| |||||||||||||| | || ||||| |||||||||||    
T  122550 tgagtttaacttagttggtaggaacattgtataatatatgtaggggtcgaagttcgaaccccagaca 122616  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 50073 - 50024
Alignment:
Q  465 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtagg 514  Q
    |||| ||||| ||| ||||||||||||||| |||||||| ||||||||||    
T  50073 ttcccgtgagcttaactcagttgatagggatattgcatattatatgtagg 50024  T

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