View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7489_low_6 (Length: 635)
Name: NF7489_low_6
Description: NF7489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7489_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 623
Target Start/End: Complemental strand, 47242324 - 47241719
Alignment:
| Q |
18 |
gtttgtttgttttaatttcagacttccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47242324 |
gtttgtttgttttaatttcagacttccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattca |
47242225 |
T |
|
| Q |
118 |
tgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47242224 |
tgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatc |
47242125 |
T |
|
| Q |
218 |
tatttgaattctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcggacttcatccctatgtgaatgtttgggttacaagtcggctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47242124 |
tatttgaattctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtctgggttacaagtcggctg |
47242025 |
T |
|
| Q |
318 |
aattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaagcaacaaaaggtgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47242024 |
aattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaagcaacaaaaggtgat |
47241925 |
T |
|
| Q |
418 |
tgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47241924 |
tgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaa |
47241825 |
T |
|
| Q |
518 |
cctccctagctcgccagagataccaaattattactttgaagaagactgatgcagtgtgaataacttagtgaatgactgaatgtggttcatgactgacaaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47241824 |
cctccctagctcgccagagataccaaattattactttgaagaagactgatgcagtgtgaataacttagtgaatgactgaatgtggttcatgactgacaaa |
47241725 |
T |
|
| Q |
618 |
tatatt |
623 |
Q |
| |
|
|||||| |
|
|
| T |
47241724 |
tatatt |
47241719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 47248769 - 47248229
Alignment:
| Q |
18 |
gtttgtttgttttaatttcagacttccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattca |
117 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||| || ||||| || |||||||||| |||| ||| ||| |
|
|
| T |
47248769 |
gtttgtttgttttaattgcagaattccaatttgcagtttgaattcctgtgcagctatcttgctgacttaagcttgttggactatgagtgtacaaggttct |
47248670 |
T |
|
| Q |
118 |
tgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatc |
217 |
Q |
| |
|
||||||| |||||||||| || ||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||| ||| |||||| || || || |
|
|
| T |
47248669 |
tgccttctgttgtggctgcatcggttatatttcttgccagatttattatccggcctggagcacatccttgggtaaatacttgttgttatggacattgatt |
47248570 |
T |
|
| Q |
218 |
tatttgaat-tctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcggacttcatccctatgtgaatgtttgggttacaagtcggct |
316 |
Q |
| |
|
||||||| | |||| | ||||||||||| |||| ||||||| ||||||||| | |||| | ||||| |||||||| |||||||||| |||||| |
|
|
| T |
47248569 |
tatttgattatctagag-----taatatttcaaagtacctaatgttcagaatctattgcagactccttccctgtgtgaatgcttgggttacacatcggct |
47248475 |
T |
|
| Q |
317 |
gaattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaagcaacaaaaggtga |
416 |
Q |
| |
|
| || ||||| |||||||| ||||||||||| |||||| ||||||||| ||||| |||||||||||||||| | || ||||||||||| | ||||||| |
|
|
| T |
47248474 |
aatttagaagattgtgttatcattttacatgatttgtatatgtcaagaaaggcaggatccttcaaagctgttcgtgacaaatacaagcagaacaaggtga |
47248375 |
T |
|
| Q |
417 |
ttgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatgtggcaa |
516 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||| |||||||||| || || |||||||||||| |||| |||||||| |
|
|
| T |
47248374 |
ttgttttaacttttgacaattcttttgttatagttatttcttattattgcaagttcattgacttgaaatcgttttctggaacagttaaaatgtgtggcaa |
47248275 |
T |
|
| Q |
517 |
acctccctagctcgccagagataccaaattattactttgaagaaga |
562 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
47248274 |
acctgccttcatcgccagagataccaaatcattactttgaaaaaga |
47248229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 33 - 562
Target Start/End: Complemental strand, 47253569 - 47253027
Alignment:
| Q |
33 |
tttcagacttccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattcatgccttcaattgtgg |
132 |
Q |
| |
|
||||||||||| || || || | |||| |||||| || |||||||| || ||||| || | ||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
47253569 |
tttcagacttcaaaattacaaatggaatttctgtgtaactatcttgctgagctaagcttgatagactatgaatgtataagattcttgccttctatggtgg |
47253470 |
T |
|
| Q |
133 |
ctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattctaaa |
232 |
Q |
| |
|
|||| |||||||| |||||||||||||| || || | |||||||||||||||| ||||||||||||||||||| | |||||| ||| | |||| | |
|
|
| T |
47253469 |
ctgcatctgttatatttcttgctagattcataatctgtcctggagtacatcctttggtaaatatttgatgttatgtactttaattgattag-tttctgta |
47253371 |
T |
|
| Q |
233 |
aaacaataa-----------tatttcaaggtacttaatgttgcgaatctatttcggacttcatccctatgtgaatgtttgggttacaagtcggctgaatt |
321 |
Q |
| |
|
||| ||| | |||||||| | | ||||||||| ||||||||| | ||| ||||| | ||||||| ||| |||||| || ||||| || |
|
|
| T |
47253370 |
aaagaatgaagtaatttctgtatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagtt |
47253271 |
T |
|
| Q |
322 |
ggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaagcaacaaaaggtgattgtt |
421 |
Q |
| |
|
||| ||||||||| ||||||| ||||| ||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47253270 |
ggaggaatgtgttctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgtt |
47253171 |
T |
|
| Q |
422 |
ttaacttttaacatttcatttgttatagttaa-----------ttcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatg |
510 |
Q |
| |
|
||| | ||| |||||||||||||| ||||||||| ||||||||| |||||||||| | |||| || |||||||||| ||| |
|
|
| T |
47253170 |
ttagccttt--------ctttgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatg |
47253079 |
T |
|
| Q |
511 |
tggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
562 |
Q |
| |
|
|||||||||| ||| || ||||| ||||||||| ||||||||| |||||| |
|
|
| T |
47253078 |
tggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
47253027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University