View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7490_high_11 (Length: 238)

Name: NF7490_high_11
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7490_high_11
NF7490_high_11
[»] chr5 (5 HSPs)
chr5 (97-222)||(14810498-14810623)
chr5 (1-73)||(20700279-20700351)
chr5 (1-71)||(18587740-18587810)
chr5 (7-73)||(14810414-14810480)
chr5 (2-71)||(42563038-42563107)
[»] chr7 (2 HSPs)
chr7 (1-73)||(13010144-13010216)
chr7 (1-72)||(34693164-34693235)
[»] chr1 (2 HSPs)
chr1 (7-73)||(18656994-18657060)
chr1 (7-73)||(3230685-3230751)
[»] chr4 (1 HSPs)
chr4 (1-70)||(29575398-29575467)
[»] chr3 (2 HSPs)
chr3 (7-69)||(47244846-47244908)
chr3 (31-69)||(47244673-47244711)
[»] chr6 (1 HSPs)
chr6 (25-53)||(14835511-14835539)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 14810498 - 14810623
Alignment:
Q  97 taatgaacatggttggtcccgcatggttcctgcccgatattttttgagttacttttgtttttggaactggcctaccctactctttttcattggcaattaa 196  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14810498 taatgaacatggttggtcccgcatgattcctgcccgatattttttgagttacttttgtttttggcactggcctaccctactctttttcattggcaattaa 14810597  T
Q  197 gaattatcctttttgtttgtactatt 222  Q
    ||||||||||||||||||||||||||    
T  14810598 gaattatcctttttgtttgtactatt 14810623  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20700279 - 20700351
Alignment:
Q  1 cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 73  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20700279 cagtacttttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 20700351  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18587810 - 18587740
Alignment:
Q  1 cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc 71  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18587810 cagtacttttgatgtaattcccttttgtattgctactattattatgaatgaatcaccttaaatttgcttgc 18587740  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 14810414 - 14810480
Alignment:
Q  7 ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 73  Q
    |||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  14810414 ttttgatgtaattcttttttgtattgctactattattatgaatgagacaccttaaatttgtttgctt 14810480  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 42563107 - 42563038
Alignment:
Q  2 agtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc 71  Q
    |||| ||||||||||||||||  | ||||||||| ||||| ||||||| ||| ||||||| |||||||||    
T  42563107 agtacttttgatgtaatttctcctagtattgctattattactatgaataaaagaccttaagtttgcttgc 42563038  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13010216 - 13010144
Alignment:
Q  1 cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 73  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13010216 cagtacttttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 13010144  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34693164 - 34693235
Alignment:
Q  1 cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgct 72  Q
    ||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  34693164 cagtacttttgatgtaattcctttttgtatcgttactattattatgaatgaaacaccttaaatttgtttgct 34693235  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 18657060 - 18656994
Alignment:
Q  7 ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 73  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18657060 ttttgatgtaattcctttttgtattgctactattattatgaatgaaacatcttaaatttgcttgctt 18656994  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 3230685 - 3230751
Alignment:
Q  7 ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 73  Q
    |||||||||||||  || ||||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  3230685 ttttgatgtaattctttcttgtattgctaatattattatgaatgaaacatcgtaagtttgcttgctt 3230751  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29575467 - 29575398
Alignment:
Q  1 cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg 70  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29575467 cagtacttttgttgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg 29575398  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 47244908 - 47244846
Alignment:
Q  7 ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgctt 69  Q
    |||||||| ||||  || ||||| ||||||||||||||||||||||||||||||| |||||||    
T  47244908 ttttgatgcaattctttcttgtactgctactattattatgaatgaaacaccttaagtttgctt 47244846  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 47244711 - 47244673
Alignment:
Q  31 tgctactattattatgaatgaaacaccttaaatttgctt 69  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  47244711 tgctactattattatgaatgaaacaccttaagtttgctt 47244673  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 14835539 - 14835511
Alignment:
Q  25 ttgtattgctactattattatgaatgaaa 53  Q
    |||||||||||||||||||||||||||||    
T  14835539 ttgtattgctactattattatgaatgaaa 14835511  T

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