View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_high_12 (Length: 237)
Name: NF7490_high_12
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6947301 - 6947527
Alignment:
| Q |
1 |
tcagttggattgcagaggctgctatacttacgtacatctatgctgtaaatgtgtgcat------aatggatactattgaactactaattatagcatcagc |
94 |
Q |
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| T |
6947301 |
tcagttggattgcagaggctgctatacttacgtacatctatgctgtaaatgtgtgcattctagcaatggatactattgaactactaattatagcatcagc |
6947400 |
T |
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| Q |
95 |
ttagaaacttataccattgtaccatacacatcaaagttcattgttaccaatatgattatcaaataaacttgagggcaaaatgattatcaaataaaaccat |
194 |
Q |
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| T |
6947401 |
ttagaaacttataccattgtaccatacacatcaaagttcattgttaccaatatgattatcaaataaacttgagggcaaaatgattatcaaataaaaccat |
6947500 |
T |
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| Q |
195 |
gatttgaaaataatcacacaatatatt |
221 |
Q |
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| T |
6947501 |
gatttgaaaataatcacacaatatatt |
6947527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 6934865 - 6934932
Alignment:
| Q |
154 |
caaataaacttgagggcaaaatgattatcaaataaaaccatgatttgaaaataatcacacaatatatt |
221 |
Q |
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| T |
6934865 |
caaataaacttgagggaaaactgattatcaaataaaaccatgatttgaaaataatcacacaatatatt |
6934932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 6934710 - 6934776
Alignment:
| Q |
64 |
atactattgaactactaattatagcatcagcttagaaacttataccattgtaccatacacatcaaag |
130 |
Q |
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| T |
6934710 |
atactactgaactattaattttggcatgagcttagaaatttataccattgtaccatacacataaaag |
6934776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 6942451 - 6942491
Alignment:
| Q |
8 |
gattgcagaggctgctatacttacgtacatctatgctgtaa |
48 |
Q |
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| T |
6942451 |
gattgcaaatgctgctatacttacgtacatcgatgctgtaa |
6942491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1985410 - 1985651
Alignment:
| Q |
1 |
tcagttggattgcagaggctgctatacttacgtacatctatgctgtaaat---gtgtgcat------aatggatactattgaactactaattatagcatc |
91 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||| || |||||||| | |
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| T |
1985410 |
tcagttggattgcaaaggctgctatag----gtacatctatgctgtaaataatgtgtgcattctagcaatggatgctattgaactattagttatagcaac |
1985505 |
T |
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| Q |
92 |
agcttagaaacttataccattgtacc-atacacatcaaagttcattgttaccaatatg-------attatcaaa--------taaacttgagggcaaaat |
175 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| | || ||| |||||||||||||||||| |
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| T |
1985506 |
agcttagaaacttataccattgtacccatacacatcaaagtgcattgttgccaatatttaaactcaatacaaaacaaataattaaacttgagggcaaaat |
1985605 |
T |
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| Q |
176 |
gattatcaaataaaaccatgatttgaaaataatcacacaatatatt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1985606 |
gattatcaaataaaaccatgatttgaaaataatcacacaatatatt |
1985651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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