View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_high_14 (Length: 222)
Name: NF7490_high_14
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 9196434 - 9196622
Alignment:
| Q |
17 |
atagatagtggaatacatggttgtcaatgatccgaagtcggaacatagttgaggtcatcatacaaagaaggttggtattttagagcttagaacgactggt |
116 |
Q |
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| T |
9196434 |
atagatagtagaatacatggttgtcaatgatccgaagtcggaacatagttgaggtcatcatacaaagaaggttggtattttaaagcttagaacgactaat |
9196533 |
T |
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| Q |
117 |
gctttactcgcgcaaagcaaaatcctaaccattactgtggacgaattaacaaaggaaatcacaaaaatccgacagcaactgaagagcat |
205 |
Q |
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| T |
9196534 |
gctttactcgcgcaaagcaaaatcctaaccattactgtggacgaattaataaaggaaatcacaaaaatccgacagcaactgaagagcat |
9196622 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 14528200 - 14528315
Alignment:
| Q |
66 |
tgaggtcatcatacaaagaaggttggtattttagagcttagaacgactggtgctttactcgcgcaaagcaaaatcctaaccattactgtggacgaattaa |
165 |
Q |
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| T |
14528200 |
tgaggtcatgataccaagaaggctgatattttagatctcaagacgaacgatgttatactcgcacaaagaaaactcctaaccagtattgtggaataattaa |
14528299 |
T |
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| Q |
166 |
caaaggaaatcacaaa |
181 |
Q |
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| T |
14528300 |
caaagaaaatcacaaa |
14528315 |
T |
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