View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_low_1 (Length: 960)
Name: NF7490_low_1
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 46141298 - 46141094
Alignment:
| Q |
20 |
gtgtgcgtatgtaactatttgtgggcgctaacagataattgtatacctaacctaacctcaccacatctcagttatacgaatattcttcctttaaaataat |
119 |
Q |
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| T |
46141298 |
gtgtgcgtatgtaactatttgtgggcgctaacagataattgtatacctaaccta-cctcaccacatctcagttatacgaatattcttcctttaaaataat |
46141200 |
T |
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| Q |
120 |
cttctgcaagaaagaaaataagatggaacagtgacctaaccatatttgaagttgtattaatattagactgtgattttctatttaattcacacactatctt |
219 |
Q |
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| T |
46141199 |
cttctgcaagaaagaaaataagatggaacagtgacctaaccatatttgaagttgtattaatagtagactgtgattttctatttaattcacacactatctt |
46141100 |
T |
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| Q |
220 |
ctgaat |
225 |
Q |
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| T |
46141099 |
gtgaat |
46141094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 341 - 749
Target Start/End: Complemental strand, 46141100 - 46140708
Alignment:
| Q |
341 |
tgtgaattgtttagagtgtttgtcggtttgtgttgtaatggttagatatttattagtcttttttgttgcgtctgtctgattatattattcagttacgtat |
440 |
Q |
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| T |
46141100 |
tgtgaattgtttagagtgtttgtcggtttgtgttgtaatagttagatgtttattagtcttttttgttgtgtctgtctgactatattatccaattacgtct |
46141001 |
T |
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| Q |
441 |
gtctgaccatattattatttaatatgttattgatttggatgacttg---cgtttgaattataggaaaggaaagaattatgcgtagtaagtcttggcaatt |
537 |
Q |
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| T |
46141000 |
gtctgatcatattattattcagtatgtaattgatttggatgacttgcgtcgtttgaattatatgaaagga----------------------tgtcaatt |
46140923 |
T |
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| Q |
538 |
aaaattct--tagttatttggtggccaaaagcaaaggaattacttttaactagtgatttacattcttggtgaataacccattgtctatatgaaaattgtt |
635 |
Q |
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| T |
46140922 |
aaaattcttatagttatttggtggccaaaagcaaagcaattacttttaactagtgatttacatttttggtgaata-------------atgaaaattgtt |
46140836 |
T |
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| Q |
636 |
tttcatattttgtatttttagggacatgagatgagatgagatccatccattaaaaa-------------------atagagtgatcctcactcaatactt |
716 |
Q |
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| T |
46140835 |
tttcatattttgtatttttagg-----gagatgagatgagatccatccattaaaaaattgaagggataggataacatagagtgatcctcactcaatactt |
46140741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 780 - 827
Target Start/End: Complemental strand, 46140674 - 46140627
Alignment:
| Q |
780 |
caagaggcgatccgcaacctacgacgttgttgaacggagcacgttctg |
827 |
Q |
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| T |
46140674 |
caagaggcgatccgcaacctacgacgttgttgaacggagcacgttctg |
46140627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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