View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7490_low_10 (Length: 250)
Name: NF7490_low_10
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 45852199 - 45852431
Alignment:
| Q |
18 |
cccgacgatgaccaaaccctaatccctttaccttattggccttccacttccgatctcgacttcgatttcgatctctactcttccgatcccgaattcccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45852199 |
cccgacgatgaccaaaccctaatccctttaccttattggccttccacttccgatctcgacttcgatttcgatctctactcttccgatcccgaattcccat |
45852298 |
T |
|
| Q |
118 |
ccaatcacaaccaccgcttttctcgcgagaatttcgtcatggatcttttccaacaacgcgttgaacaatctcaaattactaatcacaccgatccaattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45852299 |
ccaatcacaaccaccgcttttctcgcgagaatttcgtcatggatcttttccaacaacgcgttgaacaatctcaaattactaatcacaccgatccaattaa |
45852398 |
T |
|
| Q |
218 |
tcaatcgttaaacgactccgttttcgacagttt |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
45852399 |
tcaatcgttaaatgactccgttttcgacagttt |
45852431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University