View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_low_11 (Length: 247)
Name: NF7490_low_11
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 14810086 - 14810263
Alignment:
| Q |
12 |
agaaaggaacatttattgttgccttgacaacttattgtgaggctgtgatgacaatagtggagggtgaagcttggggtttgtactaagacattcaatggat |
111 |
Q |
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|||||| || |||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
14810086 |
agaaagaaaaatttgttgttgccttgacaacttattgtgaggctgtgatgacaatagcgaagggtgaagcttggggtttgtaccaaggcattcagtggat |
14810185 |
T |
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| Q |
112 |
ttcttcattacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaatgatgtgcacaatagtaagaa |
189 |
Q |
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| T |
14810186 |
ttcttcattaggataccacaatgtcatttttgagcttgattgtaaaatggttgtggatgatgtgcacgatcgtaagaa |
14810263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 20699958 - 20700134
Alignment:
| Q |
12 |
agaaaggaacatttattgttgccttgacaacttattgtgaggctgtgatgacaatagtggagggtgaagcttggggtttgtactaagacattcaatggat |
111 |
Q |
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||||||| |||||| ||| ||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
20699958 |
agaaaggcacatttgttgctgctttgacaatttattgtgaggctgcgatgataatagtggagggtgaagcttgggatttgtaccaagacattcaatggat |
20700057 |
T |
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| Q |
112 |
ttcttcattacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaatgatgtgcacaatagtaaga |
188 |
Q |
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| T |
20700058 |
ttcttcattagggtaccacgatgtcatttttgagcttgattgtaaaatggttgcagatgatgtgcacaatagtaaga |
20700134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 18588131 - 18587957
Alignment:
| Q |
12 |
agaaaggaacatttattgttgccttgacaacttattgtgaggctgtgatgacaatagtggagggtgaagcttggggtttgtactaagacattcaatggat |
111 |
Q |
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| T |
18588131 |
agaaaggaacattcattgctactatgacaacttattatgaggctgtgatgacaatagcagatggataagcttagggtttgtaccaaggcattcaatggat |
18588032 |
T |
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| Q |
112 |
ttcttcattacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaatgatgtgcacaatagtaa |
186 |
Q |
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| T |
18588031 |
ttcttcgttaggataccacaagatgaatttttagctagattgtaaaagggtcgtggatgatgtgcgcaacagtaa |
18587957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 13010538 - 13010370
Alignment:
| Q |
12 |
agaaaggaacatttattgttgccttgacaacttattgtgaggctgtgatgacaatagtggagggtgaagcttggggtttgtactaagacattcaatggat |
111 |
Q |
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||||||| |||||| ||| || ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||| |
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| T |
13010538 |
agaaaggcacatttgttgcagctttgacaacttattgtgaggttgtgattacaatagcggagggtgaagcttggggtttgtatgaaggcattcaatggat |
13010439 |
T |
|
| Q |
112 |
ttcttcattacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaatgatgtgcacaa |
180 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
13010438 |
ttcttcattacgataccacaatgtgatttttaagcttgattgtaaaatggttgtggatgatgtgcacaa |
13010370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 34692899 - 34693017
Alignment:
| Q |
70 |
ggagggtgaagcttggggtttgtactaagacattcaatggatttcttcattacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaat |
169 |
Q |
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||||||||||||||||||||||||| ||| ||||| |||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||| || |
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| T |
34692899 |
ggagggtgaagcttggggtttgtaccaaggcattcgatggatttcttcgttaggataccacaatgtgatttttgagcttgattgtaaaatggttgtggat |
34692998 |
T |
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| Q |
170 |
gatgtgcacaatagtaaga |
188 |
Q |
| |
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||||||| ||||||||||| |
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| T |
34692999 |
gatgtgcgcaatagtaaga |
34693017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 29575781 - 29575613
Alignment:
| Q |
20 |
acatttattgttgccttgacaacttattgtgaggctgtgatgacaatagtggagggtgaagcttggggtttgtactaagacattcaatggatttcttcat |
119 |
Q |
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|||||||||| ||| |||||| |||| |||||||||||||||| | ||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||| |
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| T |
29575781 |
acatttattgctgctttgacagcttactgtgaggctgtgatgaaagtagcggagggtgaagcttggggtttataccaaggcattcaatggatttcttcat |
29575682 |
T |
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| Q |
120 |
tacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaatgatgtgcacaatagtaaga |
188 |
Q |
| |
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|| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
29575681 |
tagggtaccacaatgtcatttttgagctggattgtaaaatggttgtagatgatgtgcacaatagtaaga |
29575613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 26000531 - 26000675
Alignment:
| Q |
36 |
tgacaacttattgtgaggctgtgatgacaatagt-ggagggtgaagcttggggtttgtactaagacattcaatggatttcttcattacgataccacaatg |
134 |
Q |
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||||||| |||||||||| ||||||||||||||| || |||||||| |||||||||||| ||||||||| ||| ||||||||| ||| ||||| | || | |
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| T |
26000531 |
tgacaacatattgtgaggttgtgatgacaatagtaggggggtgaag-ttggggtttgtattaagacattgaatcgatttcttccttaggatacgataagg |
26000629 |
T |
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| Q |
135 |
tcattttttagcttgattgtaaaatggttgtgaatgatgtgcacaa |
180 |
Q |
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| |||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
26000630 |
tgatttttgagctggattgtaaaatggttgtggatgatgtgcacaa |
26000675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 18657330 - 18657212
Alignment:
| Q |
70 |
ggagggtgaagcttggggtttgtactaagacattcaatggatttcttcattacgataccacaatgtcattttttagcttgattgtaaaatggttgtgaat |
169 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
18657330 |
ggagggtgaagcttggggtttgtaccaaggcattcaatggatttcttcattaggataccacaatgtcatttttgagcttgattgtaaaatggttgtggat |
18657231 |
T |
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| Q |
170 |
gatgtgcacaatagtaaga |
188 |
Q |
| |
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|||||| ||| |||||||| |
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| T |
18657230 |
gatgtgtacattagtaaga |
18657212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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