View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_low_12 (Length: 238)
Name: NF7490_low_12
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 14810498 - 14810623
Alignment:
| Q |
97 |
taatgaacatggttggtcccgcatggttcctgcccgatattttttgagttacttttgtttttggaactggcctaccctactctttttcattggcaattaa |
196 |
Q |
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| T |
14810498 |
taatgaacatggttggtcccgcatgattcctgcccgatattttttgagttacttttgtttttggcactggcctaccctactctttttcattggcaattaa |
14810597 |
T |
|
| Q |
197 |
gaattatcctttttgtttgtactatt |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14810598 |
gaattatcctttttgtttgtactatt |
14810623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20700279 - 20700351
Alignment:
| Q |
1 |
cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
73 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20700279 |
cagtacttttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
20700351 |
T |
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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18587810 - 18587740
Alignment:
| Q |
1 |
cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc |
71 |
Q |
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| T |
18587810 |
cagtacttttgatgtaattcccttttgtattgctactattattatgaatgaatcaccttaaatttgcttgc |
18587740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 14810414 - 14810480
Alignment:
| Q |
7 |
ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
73 |
Q |
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| T |
14810414 |
ttttgatgtaattcttttttgtattgctactattattatgaatgagacaccttaaatttgtttgctt |
14810480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 42563107 - 42563038
Alignment:
| Q |
2 |
agtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc |
71 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||| ||||| ||||||| ||| ||||||| ||||||||| |
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| T |
42563107 |
agtacttttgatgtaatttctcctagtattgctattattactatgaataaaagaccttaagtttgcttgc |
42563038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13010216 - 13010144
Alignment:
| Q |
1 |
cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
73 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13010216 |
cagtacttttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
13010144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34693164 - 34693235
Alignment:
| Q |
1 |
cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgct |
72 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
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| T |
34693164 |
cagtacttttgatgtaattcctttttgtatcgttactattattatgaatgaaacaccttaaatttgtttgct |
34693235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 18657060 - 18656994
Alignment:
| Q |
7 |
ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
73 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18657060 |
ttttgatgtaattcctttttgtattgctactattattatgaatgaaacatcttaaatttgcttgctt |
18656994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 3230685 - 3230751
Alignment:
| Q |
7 |
ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
73 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||||||||||| | ||| ||||||||||| |
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|
| T |
3230685 |
ttttgatgtaattctttcttgtattgctaatattattatgaatgaaacatcgtaagtttgcttgctt |
3230751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29575467 - 29575398
Alignment:
| Q |
1 |
cagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg |
70 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29575467 |
cagtacttttgttgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg |
29575398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 47244908 - 47244846
Alignment:
| Q |
7 |
ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgctt |
69 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
47244908 |
ttttgatgcaattctttcttgtactgctactattattatgaatgaaacaccttaagtttgctt |
47244846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 47244711 - 47244673
Alignment:
| Q |
31 |
tgctactattattatgaatgaaacaccttaaatttgctt |
69 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
47244711 |
tgctactattattatgaatgaaacaccttaagtttgctt |
47244673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 14835539 - 14835511
Alignment:
| Q |
25 |
ttgtattgctactattattatgaatgaaa |
53 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
14835539 |
ttgtattgctactattattatgaatgaaa |
14835511 |
T |
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