View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_low_3 (Length: 453)
Name: NF7490_low_3
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Original strand, 30402713 - 30403141
Alignment:
| Q |
20 |
gctatatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacatgcatagacaaatggttgaagga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30402713 |
gctatatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacatgcatagacaaatggttgaagga |
30402812 |
T |
|
| Q |
120 |
gattcagaggtatgagaaaatacatattcagatttccttcttgtttctatcactagagttacacatttgcaccatttccctccaatacagaagatctgaa |
219 |
Q |
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|||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30402813 |
gattcacaggtatgagaaaatagatatccagatttccttcttgtttctatcactagagttacacatttgcaccatttccctccaatacagaagatctgaa |
30402912 |
T |
|
| Q |
220 |
acatatccatattacctgtacatacgatatgaggaaccagagatgcacgcgcatctgcataaaataacttcaaaagcaaaaaatttatagcttacatatt |
319 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30402913 |
acatatccatattacctgtacatatgatacgaggaaccagagatgcacgcgcatctgcataaaataacttcaaaagcaaaaaatttatagcgtacatatt |
30403012 |
T |
|
| Q |
320 |
ttcaatcatgggacaccaacccccttttctaacttggcaacatatttatcttgtatctctagctcttcaaatgttttcttatttattagcacaggattta |
419 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30403013 |
ttcaatcatgggacacctacccccttttctaacttggcaacatatttatcttgtatctctagctcttcaaatgttttcttatttattagcacagggttta |
30403112 |
T |
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| Q |
420 |
agattaagtatgttgatgtccatctcatt |
448 |
Q |
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| T |
30403113 |
agattaagtatgttgagtttcatctcatt |
30403141 |
T |
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Back To:
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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 10784080 - 10783967
Alignment:
| Q |
20 |
gctatatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacatgcatagacaaatggttgaagga |
119 |
Q |
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|||||||||||||||| ||||| | |||||||||||| |||| || || ||||| ||||||||||||||| |||||| |||||||| ||| |||| || |
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| T |
10784080 |
gctatatatgccttgtggagtacgaagatggagacagcatgcgagtacttccttgtcatcatgaatttcatacaacatgtatagacaagtggctgaaaga |
10783981 |
T |
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| Q |
120 |
gattcagaggtatg |
133 |
Q |
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| T |
10783980 |
ggttcacaggtatg |
10783967 |
T |
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