View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_low_5 (Length: 402)
Name: NF7490_low_5
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_5 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 15190705 - 15190327
Alignment:
| Q |
7 |
ttggtggtaaagatatttgatggcaagaaccacgtgagatttcagcaagtgaattgatgaaatgtgaattggacattccatcaaggactacatggttcat |
106 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15190705 |
ttggaggtacagatatttgatggcaagaaccacgtgagatttcagccagtgaattgatgaaatgtgaattggacattccatcaaggactacatggttcat |
15190606 |
T |
|
| Q |
107 |
tgtccaactaacaaaagtaccgtcacttaactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15190605 |
tgtccaactaacaaaagtaccgtcacttaactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaag |
15190506 |
T |
|
| Q |
207 |
aaggagtggaaaacggaaggaaggtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgc |
306 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15190505 |
aaggagtggaaaaaggaaggaaggtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcatttttgc |
15190406 |
T |
|
| Q |
307 |
atgcaagggaacacgagatagtgttatcttcgtgttctgtaatttcgagacgaccagcaaagggtggaaagaatgcaag |
385 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15190405 |
atgcaagggaacacgaaatagtgttatcttcgtgttctgtaatttcgagacgaccagtaaagggtggaaagaatgcaag |
15190327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 385
Target Start/End: Complemental strand, 15744361 - 15744114
Alignment:
| Q |
138 |
tctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtggaaaacggaaggaaggtaggtgg |
237 |
Q |
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||||||||||| | |||||| ||||| |||||| |||||||||||| | |||||||||| |||||| || ||||||| || |||| | || |||| |
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| T |
15744361 |
tctgttacttgtactgcaagtaatggcattgatgtcccttcgtagtttttcactccgttaaatggaaaaaatgagtggagaattttaggatgatacgtgg |
15744262 |
T |
|
| Q |
238 |
atcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtgttatcttc |
337 |
Q |
| |
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||| | ||||| | |||| || || |||||| ||||||||||| ||||||||| |||||||||| | | |||||||||||||||||||||||| |
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| T |
15744261 |
ctccaatgatgtcatcgacactggtattttctgctgcagcatgaacaaatagtgcaccaacattgttgcacgtgatggaacacgagatagtgttatcttc |
15744162 |
T |
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| Q |
338 |
gtgttctgtaatttcgagacgaccagcaaagggtggaaagaatgcaag |
385 |
Q |
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|||||| | |||| ||||||||||| |||||||||||| ||| |||| |
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| T |
15744161 |
gtgttccttgattttgagacgaccagtaaagggtggaaaaaattcaag |
15744114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 34174836 - 34174908
Alignment:
| Q |
124 |
taccgtcacttaactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgtt |
196 |
Q |
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| T |
34174836 |
taccatcaattaactctgttacttgaactgcaagcaatggttgtgatgtacctttgtagtttttaactccgtt |
34174908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 11969636 - 11969718
Alignment:
| Q |
134 |
taactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtgga |
216 |
Q |
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||||||||||||||||| |||||||||||| | |||||| ||||| |||||| ||||||||||||||||||| || ||||||| |
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| T |
11969636 |
taactctgttacttggactgcaagcaatggctctgatgtcccttcatagtttctaactccgttaagtggaaaaaatgagtgga |
11969718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 8935396 - 8935268
Alignment:
| Q |
230 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtg |
329 |
Q |
| |
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|||||||| | |||||||||| |||||||| || ||||||| | | ||||| ||||||||| |||| |||||||||||| || ||| ||||||| ||| |
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| T |
8935396 |
gtaggtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacacctgcattgttgcatataacggagcacgagacagtt |
8935297 |
T |
|
| Q |
330 |
ttatcttcgtgttctgtaatttcgagacg |
358 |
Q |
| |
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|| |||| || ||| || |||| |||||| |
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| T |
8935296 |
ttgtcttggtattccgttattttgagacg |
8935268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 361
Target Start/End: Complemental strand, 8934455 - 8934324
Alignment:
| Q |
230 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtg |
329 |
Q |
| |
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|||||||| | |||||||||| |||||||| || ||||||| | | ||||| ||||||||| || | |||||||||||| || ||| ||||||| ||| |
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| T |
8934455 |
gtaggtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacatctgcattgttgcatataacggagcacgagacagtt |
8934356 |
T |
|
| Q |
330 |
ttatcttcgtgttctgtaatttcgagacgacc |
361 |
Q |
| |
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|| |||| || ||| || |||| ||||||||| |
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| T |
8934355 |
ttgtcttggtattccgttattttgagacgacc |
8934324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 8930000 - 8929922
Alignment:
| Q |
230 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcat |
308 |
Q |
| |
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|||||||| | |||||||||| |||||||| || ||||||| | | ||||||||||||||| || | |||||||||||| |
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| T |
8930000 |
gtaggtgggttctagaatgtcagcaacacaagtattctctgatctggcatgaacaaagagtacaactgcattgttgcat |
8929922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 358
Target Start/End: Original strand, 7637891 - 7638019
Alignment:
| Q |
230 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtg |
329 |
Q |
| |
|
|||||||| | |||| ||||| |||||||| || ||||||||| ||||| ||||||||| |||| |||||||||||| || ||||||||| | |||| |
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|
| T |
7637891 |
gtaggtgggttctaggatgtctgcaacacaagtattctctgctgcggcatggacaaagagtacacctgcattgttgcatataacggaacacgaaacagtg |
7637990 |
T |
|
| Q |
330 |
ttatcttcgtgttctgtaatttcgagacg |
358 |
Q |
| |
|
|| ||| |||||| || |||| |||||| |
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| T |
7637991 |
ttgtctctgtgttccgttattttgagacg |
7638019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 7399197 - 7399249
Alignment:
| Q |
133 |
ttaactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagttt |
185 |
Q |
| |
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|||||||||||||||| | |||||| | ||| |||||||| |||||||||||| |
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| T |
7399197 |
ttaactctgttacttgtactgcaagtagtggttgtgatgtcccttcgtagttt |
7399249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 358
Target Start/End: Original strand, 8103204 - 8103428
Alignment:
| Q |
134 |
taactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtggaaaacggaaggaaggtag |
233 |
Q |
| |
|
||||||||| ||||| | |||| |||||| |||||||| |||||||||||| | | |||||| |||||| | || || | || || || ||||| ||| |
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|
| T |
8103204 |
taactctgtcacttgcacggcaaacaatggttgtgatgtgccttcgtagtttttgattccgttcagtggataaaatgaattgagaatgggaggaatatag |
8103303 |
T |
|
| Q |
234 |
gtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtgttat |
333 |
Q |
| |
|
||| |||| || ||||| | ||||| |||||||| | | | ||||| ||||||||| |||| ||||||||||| | | |||||||| || ||||| | |
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| T |
8103304 |
gtgcatccaagtatgtcacctacacaagtgttctcagttgtagcatggacaaagagtacaccggcattgttgcacgtgaccgaacacgacatggtgttgt |
8103403 |
T |
|
| Q |
334 |
cttcgtgttctgtaatttcgagacg |
358 |
Q |
| |
|
|||| || ||||| ||||| ||||| |
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| T |
8103404 |
cttcatggtctgttatttctagacg |
8103428 |
T |
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Back To:
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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 5160 - 5219
Alignment:
| Q |
134 |
taactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactcc |
193 |
Q |
| |
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|||||| |||||||||| |||||| ||||| |||||||| |||||||||||| ||||||| |
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|
| T |
5160 |
taactccgttacttggattgcaagtaatggttgtgatgttccttcgtagtttttaactcc |
5219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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