View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7490_low_6 (Length: 382)
Name: NF7490_low_6
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7490_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 31929147 - 31928817
Alignment:
| Q |
19 |
ctcacgtgtgatatctctccaccgtttgcaaacgcaggcgcaagcgacgacgtttcgacgatgcggccattgttctccgatgacatcaactcgtttaatg |
118 |
Q |
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| T |
31929147 |
ctcacgtgtgatatctctccaccgtttgcaaacgcaggcgcaagcgacgacgtttcgacgatgcggccattgttctccgatgacatcaactcgtttaatg |
31929048 |
T |
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| Q |
119 |
atatccgcaagaagttctggaagcatggtagaccaatcagttctgtcctctgattcactaccaacggtgtcattgttggtagcattgagagccttaacat |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31929047 |
atatccgcaagaacttctggaagcatggtagaccaatcagttttgtcctctgattcactaccaacggtgtcatcgttggtagcattgagagccttaacat |
31928948 |
T |
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| Q |
219 |
tgttgaagtatctgaataatttaagagatcgaaagagcttcataagacatgtataataataatgtttctattacttagggcacaagagagagcaataaca |
318 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31928947 |
tgctgaagtatctgaataatttaagagatcgaaagagcttcataagacatgtataatgataatgtttctattacttagggcacaagagagagcgataaca |
31928848 |
T |
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| Q |
319 |
aaagaataagataataatagttctattactt |
349 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31928847 |
aaagaataagataataatagttctattactt |
31928817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 31923140 - 31922998
Alignment:
| Q |
19 |
ctcacgtgtgatatctctccaccgtttgcaaacgcaggcgcaagcgacgacgtttcgacgatgcggccattgttctccgatgacatcaactcgtttaatg |
118 |
Q |
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||||||||| ||||||||||||||||| || |||||||| ||||||||||||||| |||| |||||||| ||||| || || || ||||||||||| |
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| T |
31923140 |
ctcacgtgtaatatctctccaccgtttacacacgcaggcacaagcgacgacgttttgacggtgcggccactgttcctcggcaacgtcgactcgtttaatt |
31923041 |
T |
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| Q |
119 |
atatccgcaagaagttctggaagcatggtagaccaatcagttc |
161 |
Q |
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|| || ||||| || || || ||||| |||||||||||||||| |
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| T |
31923040 |
atctctgcaaggagatccggtagcatcgtagaccaatcagttc |
31922998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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