View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7490_low_8 (Length: 286)

Name: NF7490_low_8
Description: NF7490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7490_low_8
NF7490_low_8
[»] scaffold0101 (2 HSPs)
scaffold0101 (194-269)||(32661-32736)
scaffold0101 (52-88)||(32859-32895)
[»] chr8 (8 HSPs)
chr8 (196-269)||(17311055-17311127)
chr8 (196-260)||(17334324-17334387)
chr8 (196-265)||(17238097-17238165)
chr8 (196-260)||(17255881-17255944)
chr8 (221-269)||(17258646-17258694)
chr8 (196-265)||(42376618-42376686)
chr8 (196-265)||(17244364-17244432)
chr8 (196-269)||(17236653-17236725)


Alignment Details
Target: scaffold0101 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 32736 - 32661
Alignment:
Q  194 gattttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctgtaataagt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32736 gattttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctttaataagt 32661  T

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Target: scaffold0101; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 32895 - 32859
Alignment:
Q  52 caagaatcaagaccttcacacaatcatacttctcttc 88  Q
    |||||||||||||||||||||||||| ||||||||||    
T  32895 caagaatcaagaccttcacacaatcacacttctcttc 32859  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 17311127 - 17311055
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctgtaataagt 269  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  17311127 ttttgcagtgaaacctcttgatacaa-gggacaaaaacggctccagctagataaatcaaatttctttaataagt 17311055  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 17334387 - 17334324
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttct 260  Q
    |||||||||||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||    
T  17334387 ttttgcagtgaaacctcttgatacat-gggacaaaaacggctccagctagataaatcaaatttct 17334324  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 17238165 - 17238097
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctgtaat 265  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||  |||||||||||||||||| ||||    
T  17238165 ttttgcagtgaaacctcttgatac-aaggtacaagaaaggctccagttagataaatcaaatttctttaat 17238097  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 17255944 - 17255881
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttct 260  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||  ||||||||||||||||||    
T  17255944 ttttgcagtgaaacctcttgatac-aaggtacaagaaaggctccagttagataaatcaaatttct 17255881  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 17258694 - 17258646
Alignment:
Q  221 aagggacaagaacggctccatctagataaatcaaatttctgtaataagt 269  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  17258694 aagggacaagaacggctccagctagataaatcaaatttctttaataagt 17258646  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 42376686 - 42376618
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctgtaat 265  Q
    |||||||| |||||||||||| |||| |||||||||||||||||   |||||||||||||||||| ||||    
T  42376686 ttttgcagcgaaacctcttgacacaa-gggacaagaacggctcccagtagataaatcaaatttctttaat 42376618  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 17244432 - 17244364
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctgtaat 265  Q
    |||||||||||||| ||||||||| |||| ||||||| ||| ||| |||||||||| |||||||| ||||    
T  17244432 ttttgcagtgaaacatcttgatac-aaggcacaagaaaggccccagctagataaattaaatttctttaat 17244364  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 17236725 - 17236653
Alignment:
Q  196 ttttgcagtgaaacctcttgatacaaagggacaagaacggctccatctagataaatcaaatttctgtaataagt 269  Q
    |||||||| ||||| | |||||||||  | ||||||||||||||| ||||||| || |||||||| ||||||||    
T  17236725 ttttgcagcgaaacgtattgatacaattg-acaagaacggctccagctagatacataaaatttctttaataagt 17236653  T

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