View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7492_high_7 (Length: 367)
Name: NF7492_high_7
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_high_7 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 48025440 - 48025107
Alignment:
| Q |
16 |
ataagtaggaaggaacatgagattaacagtaacttgcaacacacaacaaacagaaaatcttacactcatat-attatcaacaacaaaagcataacttata |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48025440 |
ataagtaggaaggaacatgagattaacagtaacttgcaacaca--acaaacagaaaatcttacactcatattattatcaacaacaaaagcataacttata |
48025343 |
T |
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| Q |
115 |
aactaattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaata |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025342 |
aactaattcaactcaactcaaaaaacgatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaata |
48025243 |
T |
|
| Q |
215 |
atcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025242 |
atcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaa |
48025143 |
T |
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| Q |
315 |
ccagtttcatcaacttccaatttcaaacctttccat |
350 |
Q |
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| T |
48025142 |
ccagtttcatctacttccaatttcaaacctttccat |
48025107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 58 - 349
Target Start/End: Complemental strand, 48020615 - 48020319
Alignment:
| Q |
58 |
acaacaaacagaaaatcttacactcatatattatcaacaacaaaagc-ataacttataaactaattcaactcaactcaa----aaaacaatagaaaattg |
152 |
Q |
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|||||||||| |||| ||||| || || ||||||||| |||||| | ||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
48020615 |
acaacaaacatgaaatgttacattcttaaattatcaactacaaaaaccataacttataaactagttcatttcaactcaattgaaaaacaatagaaaatcc |
48020516 |
T |
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| Q |
153 |
acacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatcc |
252 |
Q |
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| T |
48020515 |
actcactatggcaatttcccagctcgaaaaattgcaaatttagaagcaacagagtatgaataatcaattccattctccttcaagaactcctcaagaatgc |
48020416 |
T |
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| Q |
253 |
gtttagcttcttcaggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttcca |
349 |
Q |
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| T |
48020415 |
gtttggcttcttcaggatcagaactttcacattcaatctcaaacaaagttccaaaatcaaaatgagtctcatccacttccaatttcaaacctttcca |
48020319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 26 - 350
Target Start/End: Complemental strand, 14210 - 13878
Alignment:
| Q |
26 |
aggaacatgagattaacagtaacttgcaaca--------cacaacaaacagaaaatcttacactcatatattatcaacaacaaaagcataacttataaac |
117 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14210 |
aggaacatgagattaacagtaacttgcacaatatggcaacacaacaaacagaaaatcttacactcatatattatcaacaacaaaagcataacttataaac |
14111 |
T |
|
| Q |
118 |
taattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatc |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14110 |
taattcaactcaactcaaaaaatgatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatc |
14011 |
T |
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| Q |
218 |
aatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaacca |
317 |
Q |
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| T |
14010 |
aatttcattctccttcaaaaactcctccagaatctgtttagcttcttcaggatcagagctttcacactcaatctcaaacaaagtcccaaaatcaaaacca |
13911 |
T |
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| Q |
318 |
gtttcatcaacttccaatttcaaacctttccat |
350 |
Q |
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| T |
13910 |
gtttcatcaacttccaatttcaaacctttccat |
13878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 26 - 350
Target Start/End: Complemental strand, 51935040 - 51934708
Alignment:
| Q |
26 |
aggaacatgagattaacagtaacttgcaaca--------cacaacaaacagaaaatcttacactcatatattatcaacaacaaaagcataacttataaac |
117 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51935040 |
aggaacatgagattaacagtaacttgcacaatatggcaacacaacaaacataaaatcttacactcatatattatcaacaacaaaaacataacttataaac |
51934941 |
T |
|
| Q |
118 |
taattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatc |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51934940 |
taattcaactcaactcaaaaaacgatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaaaagagtatgaataatc |
51934841 |
T |
|
| Q |
218 |
aatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaaacaaagtcccaaaatcaaaacca |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51934840 |
aatatcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaaacaaagtctcaaaatcaaaacca |
51934741 |
T |
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| Q |
318 |
gtttcatcaacttccaatttcaaacctttccat |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51934740 |
gtttcatcaacttccaatttcaaacctttccat |
51934708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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