View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7492_low_16 (Length: 266)

Name: NF7492_low_16
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7492_low_16
NF7492_low_16
[»] chr6 (6 HSPs)
chr6 (17-261)||(28715875-28716119)
chr6 (17-161)||(22021438-22021577)
chr6 (74-161)||(22010016-22010103)
chr6 (17-51)||(22010107-22010141)
chr6 (163-195)||(22009740-22009772)
chr6 (163-195)||(22055840-22055872)
[»] chr4 (10 HSPs)
chr4 (17-159)||(4938408-4938544)
chr4 (17-161)||(4916942-4917079)
chr4 (17-127)||(4930203-4930315)
chr4 (163-195)||(4916694-4916726)
chr4 (163-195)||(4930090-4930122)
chr4 (163-195)||(4985049-4985081)
chr4 (17-52)||(4950964-4950999)
chr4 (163-194)||(4975356-4975387)
chr4 (163-195)||(4938353-4938385)
chr4 (163-195)||(4950739-4950771)
[»] chr2 (5 HSPs)
chr2 (17-161)||(44331546-44331685)
chr2 (74-161)||(44310298-44310385)
chr2 (17-51)||(44310389-44310423)
chr2 (163-195)||(44310022-44310054)
chr2 (163-195)||(44366225-44366257)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 28716119 - 28715875
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctccagctccacacttgagcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28716119 attttccaattccacccatgcccaaaggcagctccagctccacacttgagcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcatg 28716020  T
Q  117 tttaagaagataatgatcaacttgtttcaagttacgtttacatatctatatataccttaatttcttgataaaatacatgnnnnnnnncttggtttttagt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  28716019 tttaagaagataatgatcaacttgtttcaagttacgtttacatatctatatataccttaatttcttgataaaatacatgttttttttcttggtttttagt 28715920  T
Q  217 caccacggattaactgcacacatgaggaacacaatgatattcttc 261  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||    
T  28715919 caccacggattacctgcacacatgaggaacacaatgattttcttc 28715875  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 22021577 - 22021438
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctccagctccacacttg-agcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcat 115  Q
    |||||||||||||||||||||||||| |||||||||      |||||  | | |||| |||||||||||||| ||||||||||||||||||||||||||     
T  22021577 attttccaattccacccatgcccaaaagcagctcca------cacttccaacatgagattcatgcacatggtgagtttctgcaccaacaagacaaatcac 22021484  T
Q  116 gtttaagaagataatgatcaacttgtttcaagttacgtttacatat 161  Q
    ||||||||||||||| || |||||||||||| ||| ||||||||||    
T  22021483 gtttaagaagataataattaacttgtttcaacttatgtttacatat 22021438  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 22010103 - 22010016
Alignment:
Q  74 ttcatgcacatggtaagtttctgcaccaacaagacaaatcatgtttaagaagataatgatcaacttgtttcaagttacgtttacatat 161  Q
    |||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||  ||| ||||||||||    
T  22010103 ttcatgcgaatggtgagtttctgcaccaacaagacaaatcacgtttaagaagataataattaacttgtttcagcttatgtttacatat 22010016  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 22010141 - 22010107
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctcc 51  Q
    |||||||||||||||||||||||||||||||||||    
T  22010141 attttccaattccacccatgcccaaaggcagctcc 22010107  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 22009772 - 22009740
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||| ||||||||||||||||||||||||||||    
T  22009772 tatacataccttaatttcttgataaaatacatg 22009740  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 22055872 - 22055840
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||||| ||||||||||||||||||||||||||    
T  22055872 tatatacaccttaatttcttgataaaatacatg 22055840  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 4938544 - 4938408
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctccagctccacacttgagcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcatg 116  Q
    |||||||||||||||||||||||||||||| |||||      ||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||| |    
T  4938544 attttccaattccacccatgcccaaaggcaactcca------cacttcaccgtgaggttcatgcacatggtgagtttctgcacccacaagacaaatcacg 4938451  T
Q  117 tttaagaagataatgatcaacttgtttcaagttacgtttacat 159  Q
    ||||| |||||||| || |||||||||||| |||| |||||||    
T  4938450 tttaacaagataataattaacttgtttcaacttacatttacat 4938408  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 4917079 - 4916942
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctccagctccacacttgagcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcatg 116  Q
    ||||||||||||||||||||||||||||||||||||      ||||| |||||||||||||||| || ||| |||||||||||| |||||||||||||||    
T  4917079 attttccaattccacccatgcccaaaggcagctcca------cactttagcgtgaggttcatgctcaaggtgagtttctgcacccacaagacaaatcatg 4916986  T
Q  117 tttaagaagataatgatcaacttgtttcaagttacgtttacatat 161  Q
    ||| |||| ||||| || |||||| ||||| |||| || ||||||    
T  4916985 ttt-agaaaataataattaacttgcttcaacttacattcacatat 4916942  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 4930315 - 4930203
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctccag-ctccacac-ttgagcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatca 114  Q
    |||||||||||||||||||||||||||| |||||||  || ||  | || ||||| |||||||||| |||||  |||||||||||| |||||||||||||    
T  4930315 attttccaattccacccatgcccaaaggaagctccacacttcagccgttcagcgtaaggttcatgctcatggcgagtttctgcacccacaagacaaatca 4930216  T
Q  115 tgtttaagaagat 127  Q
     ||||||||||||    
T  4930215 cgtttaagaagat 4930203  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4916726 - 4916694
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||||||||||||||||||||||||||||||||    
T  4916726 tatatataccttaatttcttgataaaatacatg 4916694  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4930122 - 4930090
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||||||||||||||||||||||||||||||||    
T  4930122 tatatataccttaatttcttgataaaatacatg 4930090  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4985081 - 4985049
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||||||||||||||||||||||||||||||||    
T  4985081 tatatataccttaatttcttgataaaatacatg 4985049  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 4950999 - 4950964
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctcca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  4950999 attttccagttccacccatgcccaaaggcagctcca 4950964  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 4975387 - 4975356
Alignment:
Q  163 tatatataccttaatttcttgataaaatacat 194  Q
    ||||||||||||||||||||||||||||||||    
T  4975387 tatatataccttaatttcttgataaaatacat 4975356  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4938385 - 4938353
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||||||||||||||||||||||||||| ||||    
T  4938385 tatatataccttaatttcttgataaaatgcatg 4938353  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4950771 - 4950739
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||| ||||||||||||||||||||||||||||    
T  4950771 tatacataccttaatttcttgataaaatacatg 4950739  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 44331685 - 44331546
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctccagctccacacttg-agcgtgaggttcatgcacatggtaagtttctgcaccaacaagacaaatcat 115  Q
    |||||||||||||||||||||||||| |||||||||      |||||  | | |||| |||||||||||||| ||||||||||||||||||||||||||     
T  44331685 attttccaattccacccatgcccaaaagcagctcca------cacttccaacatgagattcatgcacatggtgagtttctgcaccaacaagacaaatcac 44331592  T
Q  116 gtttaagaagataatgatcaacttgtttcaagttacgtttacatat 161  Q
    ||||||||||||||| || |||||||||||| ||| ||||||||||    
T  44331591 gtttaagaagataataattaacttgtttcaacttatgtttacatat 44331546  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 44310385 - 44310298
Alignment:
Q  74 ttcatgcacatggtaagtttctgcaccaacaagacaaatcatgtttaagaagataatgatcaacttgtttcaagttacgtttacatat 161  Q
    |||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||  ||| ||||||||||    
T  44310385 ttcatgcgaatggtgagtttctgcaccaacaagacaaatcacgtttaagaagataataattaacttgtttcagcttatgtttacatat 44310298  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 44310423 - 44310389
Alignment:
Q  17 attttccaattccacccatgcccaaaggcagctcc 51  Q
    |||||||||||||||||||||||||||||||||||    
T  44310423 attttccaattccacccatgcccaaaggcagctcc 44310389  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 44310054 - 44310022
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||| ||||||||||||||||||||||||||||    
T  44310054 tatacataccttaatttcttgataaaatacatg 44310022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 44366257 - 44366225
Alignment:
Q  163 tatatataccttaatttcttgataaaatacatg 195  Q
    |||||| ||||||||||||||||||||||||||    
T  44366257 tatatacaccttaatttcttgataaaatacatg 44366225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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