View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7492_low_2 (Length: 771)
Name: NF7492_low_2
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 770
Target Start/End: Original strand, 21056169 - 21056952
Alignment:
| Q |
1 |
agatatagaaaaagttgatgtccggctacattgagaaggtgttgctcattgtgtctggaaactttcttatcattgcatgtatttgattcgtttgggaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056169 |
agatatagaaaaagttgatgtccggctacattgagaaggtgttgctcattgtgtctgcaaactttcttatcattgcatgtatttgattcgtttgggaaat |
21056268 |
T |
|
| Q |
101 |
tactatgataggtatttatgtgctattatactg-acaaaaattgatnnnnnnnnntatataataatgaaatagaagtcaaattctcatgtgttgcacaag |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
21056269 |
tactatgataggtatttatgtgctattatactgcacaaaaattgataaaaaaaa-tatataataatgaaatagaagtcaaattctcatgtggttcacaag |
21056367 |
T |
|
| Q |
200 |
gattgtgcactattgatttgatgaaattatctggagaattctgctttgactataataaaattgagggatagaaaatgcagaatccgtggaaataaatttt |
299 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056368 |
gattgtgcactattgatttggtgaaattatctcgagaattctgctttgactataataaaattgagggatagaaaatgcagaatccgtggaaataaatttt |
21056467 |
T |
|
| Q |
300 |
gcaggaactggactttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaac---------- |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056468 |
gcaggaactggactttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaacaagatagaga |
21056567 |
T |
|
| Q |
390 |
----tagccgcaaaaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttctt |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056568 |
caactagccgcaaaaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttctt |
21056667 |
T |
|
| Q |
486 |
gatatttaggcgttgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcatttcnnnnnnnattac |
585 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
21056668 |
gatatttaagcattgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcgtttctttttttattac |
21056767 |
T |
|
| Q |
586 |
taaaaggtgatctccagtttcgttgtccagagtccaaacatagctttaattgatttctagaactcaagcttcctttaattgactatttaaattatttgaa |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056768 |
taaaaggtgatctccagtttcgttgtccagagtccagacatagctttaattgatttctagaactcaagcttcctttaattgactatttaaattatttgaa |
21056867 |
T |
|
| Q |
686 |
cctgtttgtaattattgtaaatgggagaaacatcttgttattatctatagagatgaatatagctactgcttcacttcttctcact |
770 |
Q |
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| T |
21056868 |
cctgtttgtaattattttaaatgggagaaacatcttgttattatctatagagatgaatatagctactgcttcacttcttttcact |
21056952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 5e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 288 - 770
Target Start/End: Complemental strand, 26365518 - 26365061
Alignment:
| Q |
288 |
gaaataaattttgcaggaactggactttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaaca |
387 |
Q |
| |
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||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
26365518 |
gaaattaaatttgcaggaactgaactttaagcaagaatggaaggagtgatcttggtccaactgttgcctaatttgagtagaggatttggttgaagagaca |
26365419 |
T |
|
| Q |
388 |
actagccgc--aaaaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttctt |
485 |
Q |
| |
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|| ||| | ||||| |||||||| |||||||||| |||||||||||||||||||| ||||| | |||| |||||||||| |
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| T |
26365418 |
acaagctgactaaaaaagaagatcttgaaggtgaat--gaatcatacaattttatacaatatgcta--------------ttat------tacatttctt |
26365341 |
T |
|
| Q |
486 |
gatatttaggcgttgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcac--ctgtattttgatttactcgacatcatttcnnnnnnnatt |
583 |
Q |
| |
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|||||||||| |||| |||||| ||||| ||||| |||||||| |||||||| |||||| ||||||||||||||||| ||| ||||||| ||| |
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| T |
26365340 |
gatatttaggtgttgattaattcacattgaatcgtttgagaaacatgcttct-ttgcacacctgtattttgatttacttgacgtcatttctttttttatt |
26365242 |
T |
|
| Q |
584 |
actaaaaggtgatctccagtttcgttgtccagagtccaaacatagctttaattgatt-tctagaactcaagcttcctttaattgactatttaaattattt |
682 |
Q |
| |
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|| ||||||||| || ||||| || |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26365241 |
acgaaaaggtgacctaaagttt----gt----agtcgagacatagctttaattgattatctagaactcaagcttcctttaattgactatttaaactattt |
26365150 |
T |
|
| Q |
683 |
gaacctgtttgtaattattgtaaatgggagaaacatcttgttattatctatagagatgaata-tagctactgcttcacttcttctcact |
770 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
26365149 |
gaacctgtttataattattttaaaagggagaaacatctttttattatctatagagatgaatattagctactgcttcacttcttttcact |
26365061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 26365780 - 26365654
Alignment:
| Q |
3 |
atatagaaaaagttgatgtccggctacattgagaaggtgttgctcattgtgtctggaaactttcttatcattgcatgtatttgattc-gtttgggaaatt |
101 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||| |||||||||||||| | |||| | | || ||||||||| ||||||||| ||||||||||| |
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| T |
26365780 |
atatagaaaaagttgatatccagctagattgagaaggttttgctcattgtgtcagcaaacatgc-tagcattgcatgcatttgattctatttgggaaatt |
26365682 |
T |
|
| Q |
102 |
actatgataggtatttatgtgctattat |
129 |
Q |
| |
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| ||||||| | || |||||| |||||| |
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| T |
26365681 |
aatatgatatgcatctatgtgttattat |
26365654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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