View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7492_low_22 (Length: 208)
Name: NF7492_low_22
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 289788 - 289959
Alignment:
| Q |
16 |
aatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcaggaaacacactcaagtgggaatgggcatccg |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
289788 |
aatatgtctaatccaaggtttagtatatttcttactgcatgtttagcattgttgtgtacttgttcattaggaaacacactcaagtgggaatgggcatccg |
289887 |
T |
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| Q |
116 |
aaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgtta |
187 |
Q |
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| T |
289888 |
aaccaatgcaagacaccttactaggcaaagggacatttactgcatctaaacttttaaatcaaaagaatgtta |
289959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 279432 - 279514
Alignment:
| Q |
105 |
atgggcatccgaaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgtta |
187 |
Q |
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| T |
279432 |
atggacatccgacccaatggaagacacttttcaaggtaaagggacatttactgcatctcaacttttagatcaaaagagtgtta |
279514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 278110 - 278179
Alignment:
| Q |
16 |
aatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcag |
85 |
Q |
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| T |
278110 |
aatatgtctaatgctatgtttgggacatttcttattgcatgcttagcattgttgtacacttgttcatcag |
278179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 24524842 - 24525013
Alignment:
| Q |
16 |
aatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcaggaaacacactcaagtgggaatgggcatccg |
115 |
Q |
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| T |
24524842 |
aatatgtctaatcctaggtttcgtacatttcttactgcatgtttagcattattgtgtacttgttcattaggaaacccactcaagtgggaatgggcatctg |
24524941 |
T |
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| Q |
116 |
aaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgtta |
187 |
Q |
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|||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524942 |
aaccaatgcaagacaccttaccaggcaaagggacatttactgcatctaaacttttagatcaaaagaatgtta |
24525013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 24531515 - 24531686
Alignment:
| Q |
16 |
aatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcaggaaacacactcaagtgggaatgggcatccg |
115 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||| | |
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| T |
24531515 |
aatatgtctaatcctaggtttcgtacatttcttactgcatgtttagcattattgtgtacttgttcattaggaaacccactcaagtgggaatgggcatctg |
24531614 |
T |
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| Q |
116 |
aaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgtta |
187 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24531615 |
aaccaatgcaagacaccttactaggccaagggacatttactgcatctaaacttttagatcaaaagaatgtta |
24531686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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