View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7492_low_3 (Length: 706)
Name: NF7492_low_3
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 56068120 - 56068654
Alignment:
| Q |
1 |
cctcttaagggttatcttctcaagtatagggaaattgaaggagacaagaatttctctatgaatatgattggtagtagtaaggagcagcaaggtagtattc |
100 |
Q |
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| T |
56068120 |
cctcttaagggttatcttctcaagtatagggaaattgaaggagacaagaatttctctatgaatatgattggtagtaataaggagcaggaaggtagtattc |
56068219 |
T |
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| Q |
101 |
atcgattcttccaaggttaattatatttgcaacaactaatagcaggtttatttgtttatttatgcctctttttgaggcttttaatgtctgattgcagaac |
200 |
Q |
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| T |
56068220 |
atcgattcttccaaggttaattatatttgcaacaactaatagcaggtttatttgtttatttatgcctccttttgaggcttttaatgtttgattgcagaac |
56068319 |
T |
|
| Q |
201 |
tatacactagtttgtta---------------ttgttgttgagattataatatacacattaagtatagtgatgatttgtatttttgttttgagattgaga |
285 |
Q |
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| T |
56068320 |
tatacactagtttgttattgttgtttgtatttttgttgttgagattataatatacacattaagtatagtgatgatttgtatttttgttttgagattgaga |
56068419 |
T |
|
| Q |
286 |
atatatatacatgatacaaattaattttggtgatgatttggaatacatttgaannnnnnnnctgcaaaagcaggaagtaagtttggtaaaatcacggatt |
385 |
Q |
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| T |
56068420 |
atatatatacatgatacaaattaattttggtgatgatttggaatacatttgaatttttttgctgcaaaagcaggaagtaagtttggtaaaatcacggatt |
56068519 |
T |
|
| Q |
386 |
ttgttccgtagtttttgtcaaaattgtagtgactcaccatgattccgttaataaactttgggaaactcaacctacactttcacttgaaagaacctaaata |
485 |
Q |
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| T |
56068520 |
ttgttccgtagtttttgtcaaaattgtagtgactcatcatgattcc---attaaactttggaaaactcaacccacactttcacttgaaagaacctaaata |
56068616 |
T |
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| Q |
486 |
attgagtgactagttcatgtccataaaagaatacaaat |
523 |
Q |
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| T |
56068617 |
attgagggactagttcatgtccataaaagaatacaaat |
56068654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 520 - 688
Target Start/End: Original strand, 56068678 - 56068843
Alignment:
| Q |
520 |
aaatggataagagggagcattacaattaattatgttgcttnnnnnnngggattataattactaatgcatatcttttcattagagttgacttcaaatggtt |
619 |
Q |
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| T |
56068678 |
aaatggataagagggagcattataattaattatgttgcttaaaaaaagggattata---actaatgcatatcttttcattagagttgacttcaaatggtt |
56068774 |
T |
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| Q |
620 |
taattaattgcccccctcatagtggatgtaggcactaggcagggtaatgcattatctgaagtccttgct |
688 |
Q |
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| T |
56068775 |
taattaattgcccccctcatagtggatgtaggcactaggcagggtaatgcattatctgaaggccttgct |
56068843 |
T |
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Back To:
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