View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7492_low_4 (Length: 675)
Name: NF7492_low_4
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 23 - 663
Target Start/End: Complemental strand, 28036816 - 28036176
Alignment:
| Q |
23 |
cgcaaaacctcaatgcagttagaaaattcccttggagatgttcaatggttgttaagagtctcggcttctgcagaagaacgcgatgatgaatatcttggtc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036816 |
cgcaaaacctcaatgcagttagaaaattcccttggagatattcaatggttgttaagagtctcggcttctgcagaagaacgcgatgatgaatatcttggtc |
28036717 |
T |
|
| Q |
123 |
ttcctcctatagcagctaatgaaccaattctatgtctcatttgggaacaagttgcaattttgctttctggttgttcaatagatgaacgttctgatgctgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036716 |
ttcctcctatagcagctaatgaaccaattctctgtctcatttgggaacaagttgcaattttgctttctggttgttcaatagatgaacgttctgatgctgc |
28036617 |
T |
|
| Q |
223 |
agcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttccacctcttcttaaacttcttaaagaagga |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036616 |
agcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttccacctcttcttaaacttcttaaagaagga |
28036517 |
T |
|
| Q |
323 |
agacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagcgttgaacatattgtgaattgtggtgtttgttcggttt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036516 |
agacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagtgttgaacatattgtgaattgtggtgtttgttcggttt |
28036417 |
T |
|
| Q |
423 |
ttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcattt |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036416 |
ttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcattt |
28036317 |
T |
|
| Q |
523 |
tgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctattacaaacaaacaaaacatgtcc |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28036316 |
tgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctattaccaacaaacaaaacatgtcc |
28036217 |
T |
|
| Q |
623 |
tccttacattctctagttatggctagcaacaccaacaccaa |
663 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28036216 |
tccttacattctcttgttatggctagcaacaccaacaccaa |
28036176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 406 - 601
Target Start/End: Original strand, 8756715 - 8756910
Alignment:
| Q |
406 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
505 |
Q |
| |
|
|||||||||||| |||||||||||| | || ||||| |||| ||||| |||||| ||||||||||||||| |||| |||||||| || || |||| |
|
|
| T |
8756715 |
tggtgtttgttctgtttttgcgaaaattcttaaagaaggtcctatgaaagttcaaggtgttgttgcttgggctgtttctgaacttgctgctaattatcct |
8756814 |
T |
|
| Q |
506 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
601 |
Q |
| |
|
|||||||| || | |||||||||| ||||| |||| | ||||||||| ||||| | ||||||||||| || | ||||||||||||||| ||||| |
|
|
| T |
8756815 |
aaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
8756910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 591
Target Start/End: Complemental strand, 32031687 - 32031502
Alignment:
| Q |
406 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
505 |
Q |
| |
|
|||||||||||| ||||| ||||| | || ||||| |||| ||||| |||||| ||||| ||||||||| |||| ||||||| | | |||| |
|
|
| T |
32031687 |
tggtgtttgttctgttttcgcgaagattcttaaagaaggtcctatgaaagttcaagctgttgtagcttgggctgtttctgaacttgtttctaagtatcct |
32031588 |
T |
|
| Q |
506 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaa |
591 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | || | |||||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
32031587 |
aaatgtcaagatgtttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaa |
32031502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University