View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7492_low_5 (Length: 646)
Name: NF7492_low_5
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_low_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Complemental strand, 11691175 - 11690542
Alignment:
| Q |
17 |
aaaattacttttaaattagtggaaaagattgagaagttgtttggaaagtggaaactggaacatcgaagacgataccttaactcgtttctatttatagcat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11691175 |
aaaattacttttaaatgagtggaaaagattgagaagttgtttggaaagtggaaactggaacatcgaagacgataccttaactcgtttctatttatagcat |
11691076 |
T |
|
| Q |
117 |
ttagaattggtgtctatctgcaacttttcatgttatttgtttttgttaattttagtacttgaacaaagataagattggtttggnnnnnnnnnnnnn---- |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
11691075 |
ttggaattggtgtctatctgcaacttttcatgttatttgtttttgttgattt-agtacttgaacaaagataagattggtttggttttttttttttttttt |
11690977 |
T |
|
| Q |
213 |
-ataagaaagagtgagttgatatggggggacgaagttctaaggaagaaagttggaggcagagttcaaattcttggagggaatatatcgatccacaatcga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11690976 |
tataagaaagagtgagttgatatggggggacgaagttccaaggaagaaagttggaggcagagttcaaattcttggagggaatatatcgatccacaatcga |
11690877 |
T |
|
| Q |
312 |
gttatggtcaggggagttatgcttatgaatatgatccacatccctcttattcttctccgcagctgtattataacctgcctcctccaagttactatggtgc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11690876 |
gttatggtcaggggagttatgcttatgaatatgatccacatccctcttattcttcttcgcagctgtattataacccgcctcctccaagttactatggtgc |
11690777 |
T |
|
| Q |
412 |
tagcgagttttatgagagtcgtagagtggcctttgatgaaggtacaaagttgcaaaggaaatactcaagaattgctgataattacaattccatagatgag |
511 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11690776 |
tggcgagttttatgagagtcgtagagtggcctttgatgaaggtacaaagttgcaaaggaaatactcaagaattgctgataattacaattccatagatgag |
11690677 |
T |
|
| Q |
512 |
gtaagacattagtcgctttacgtaaatgaccacttgttcatcttgcttcaacatgcagttaaagtatgttaatttgagttctctgaaaagaaagataaat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11690676 |
gtaagacattagtcgctttacgtaaatgaccatttgttcatcttgcttcaacatgcagttaaagtatgttaatttgagttctccgaaaagaaagataaat |
11690577 |
T |
|
| Q |
612 |
actcggaatacttagttaactattttgcaatttta |
646 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
11690576 |
actcggcatatttagtttactattttgcaatttta |
11690542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 7472471 - 7472519
Alignment:
| Q |
467 |
aggaaatactcaagaattgctgataattacaattccatagatgaggtaa |
515 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7472471 |
aggaaatactcgaggattgctgataattacaactccatagacgaggtaa |
7472519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University