View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7492_low_6 (Length: 625)
Name: NF7492_low_6
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7492_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Complemental strand, 28800290 - 28799700
Alignment:
| Q |
14 |
gttggacttttgtatgtctaaatatataatacatcnnnnnnnnn----gtaattgagaaatgtgtaggnnnnnnngggtggtgaaaacattgttatttaa |
109 |
Q |
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| T |
28800290 |
gttggacttttgtatgtctaaatatataatacatcattttttttttttgtaattgagaaatgtgtaggaaaaaaagagtggtaaaaacattggtatttaa |
28800191 |
T |
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| Q |
110 |
ggtttctttacattgtgtatgtaatgtattgtttctagtgcgagctttgattctcttctatcttttgcagattgaggttagtcattgtattcatgtaaca |
209 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28800190 |
ggtttctttacattttgtatgtaatgtattgtttctagtgcgagctttgattctcttatatcttttgcagattgaggttagtcattgtattcatgtaaca |
28800091 |
T |
|
| Q |
210 |
atctgcagagatagtagagaagttgagtttgtcttcgcgttagtttacttttaacgaaatttatagataatatatatat--gtctaaaagtaagtttatt |
307 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28800090 |
atctgcc--------agagaagttaagtttgtcttcgcgttagtttacttttaacgaaatttatagataatatatatatatgtctaaaagtaagtttatt |
28799999 |
T |
|
| Q |
308 |
tttcaatttcaaaaggttaatgcacctttgtggaggaatcttgaaattttttgacctctttacaagaaagagccatttgtttatcttccaatcaa-acat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
28799998 |
tttcaatttcaaaaggttaatgcacctttgtggaggaatcttgaaattttttgacctctttacaagaaagagccatttgtttatcgaccaatcaactcat |
28799899 |
T |
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| Q |
407 |
tggttactttaacttaaactatttttattgtctgtttaacctataaaatcatggatattttttcccaacgcaatgagtatttcaagctctccatggcccc |
506 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28799898 |
tggttactttaacttaaactatttttattgtctgttttacctataaaatcatggatattttttcccaacgcaatgagtatttcaagctctccatggcccc |
28799799 |
T |
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| Q |
507 |
tgaattcaacnnnnnnnnnnntctatacaaattttcattagatacaaaactttctttgatgccccgctaacgatattatagtcaatattatctcctagat |
606 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28799798 |
tgaattcaacaaaaaaaaat---tatacaaattttcattagatacaaaactttctttgatgccccgctaacgatattatagtcaatattatctcctagat |
28799702 |
T |
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