View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7492_low_7 (Length: 564)

Name: NF7492_low_7
Description: NF7492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7492_low_7
NF7492_low_7
[»] chr1 (6 HSPs)
chr1 (19-547)||(32592498-32593026)
chr1 (75-232)||(31527255-31527412)
chr1 (19-215)||(37030630-37030826)
chr1 (21-147)||(51824717-51824843)
chr1 (264-354)||(51824148-51824242)
chr1 (152-232)||(51824268-51824353)
[»] chr3 (9 HSPs)
chr3 (19-240)||(49208107-49208328)
chr3 (19-240)||(49212947-49213168)
chr3 (19-215)||(49188119-49188315)
chr3 (19-215)||(49191855-49192051)
chr3 (19-215)||(49202961-49203157)
chr3 (415-547)||(49212066-49212193)
chr3 (356-416)||(49207608-49207668)
chr3 (490-544)||(49207499-49207552)
chr3 (264-300)||(49208053-49208089)
[»] chr8 (1 HSPs)
chr8 (19-222)||(26756489-26756694)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 32592498 - 32593026
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32592498 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttgca 32592597  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtcca 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32592598 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaaggttagtcca 32592697  T
Q  219 tgcaaatataactctttctttcnnnnnnnnnnnnnnnnnnnnnnncaaattgttttactagcaacaatattaatacttcaatatcttttggtagaaaata 318  Q
    |||||||||||| | |||||||                       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32592698 tgcaaatataaccccttctttcatttattagttattattattattcaaattggtttactagcaacaatattaatacttcaatatcttttggtagaaaata 32592797  T
Q  319 agtcaccgtagttaaagttttttggcatacatgaatctatcatttgctaaatttatgtatcattataaaactaaatcatatggtatgttcatataatatt 418  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32592798 agtcactgtagttcaagtattttggcatacatgaatctatcatttgctaaatttatgtatcattataaaactaaatcatacggtatgttcatataatatt 32592897  T
Q  419 tgttttatggcaattttgttctaaattaattttgttaggaatgtgccaaatctaaatcgtggatcccttcgcttgctattattttgtgtacttttggtca 518  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32592898 tgttttatgacaattttgttctaaattaattttgttaggaatgtgccaaatctaaatcgtggatcccttcgcttgctattattttgtgtacttttggtca 32592997  T
Q  519 agtttgttgagttagcaaatgctatgttt 547  Q
    |||||||||||||||||||||||||||||    
T  32592998 agtttgttgagttagcaaatgctatgttt 32593026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 31527412 - 31527255
Alignment:
Q  75 gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31527412 gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt 31527313  T
Q  175 tacttagcaaagctagtgttgagtatgaaaccaaggttagtccatgcaaatataactc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31527312 tacttagcaaagctagtgttgagtatgaaaccaaggttagtccatgcaaatataactc 31527255  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 37030826 - 37030630
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    || ||||||   ||||||||||||||||| ||    
T  37030826 attctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagttaca 37030727  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 215  Q
     ||||| ||||||||||||||||| |||||||||||||| || |||||||| || || |||||||||||||||||| | ||||||||||||||||||    
T  37030726 aggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagt 37030630  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 51824843 - 51824717
Alignment:
Q  21 tctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgcagg 120  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| |    
T  51824843 tctgagttggcgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaag 51824744  T
Q  121 gtgaggttgagaggatgaatgctttga 147  Q
    |||||||||||| ||||||||||||||    
T  51824743 gtgaggttgagaagatgaatgctttga 51824717  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 264 - 354
Target Start/End: Complemental strand, 51824242 - 51824148
Alignment:
Q  264 caaattgttttactagcaacaatattaatacttcaatatcttttggtagaaa----ataagtcaccgtagttaaagttttttggcatacatgaat 354  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||    |||| |||| |||||||||||||||| ||||||||||||    
T  51824242 caaattgttttactagcaacaagattaatacttcaatatcttctggtagaaaataaataattcactgtagttaaagttttttcgcatacatgaat 51824148  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 51824353 - 51824268
Alignment:
Q  152 tactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggt-----tagtccatgcaaatataactc 232  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||     |||||||||||||||||||||    
T  51824353 tactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtttagtccatgcaaatataactc 51824268  T

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Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 49208328 - 49208107
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    |||| |||||||| ||||||||||| |||||||| | ||||||||||||||||||  | |||||||||||||| ||||||||||||||||||||||||||    
T  49208328 attccgagttggctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttgca 49208229  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtcca 218  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||     
T  49208228 aggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatgacactaaggttagtcct 49208129  T
Q  219 tgcaaatataactctttctttc 240  Q
    ||||||| |||||  |||||||    
T  49208128 tgcaaatttaacttcttctttc 49208107  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 49213168 - 49212947
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    |||| |||||||| || ||||| || |||||||| ||||||||||| ||||||||||| |||||    || |||||||||||||||||||||||||||||    
T  49213168 attcggagttggccaaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttgca 49213069  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtcca 218  Q
     ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  49213068 aggtgaggttgagaagatgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaaggttagtcca 49212969  T
Q  219 tgcaaatataactctttctttc 240  Q
    ||||| |||||||  |||||||    
T  49212968 tgcaactataacttcttctttc 49212947  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 49188315 - 49188119
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    || ||||| |||||||||||||||||||||||    
T  49188315 attctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttgca 49188216  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 215  Q
     ||||| || |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  49188215 aggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagt 49188119  T

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Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 49192051 - 49191855
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||| ||    
T  49192051 attctgaattggctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagttaca 49191952  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 215  Q
     ||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| | ||||||||||||||||||    
T  49191951 aggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagt 49191855  T

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Target: chr3; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 49203157 - 49202961
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    ||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| |||||    || || |||||||||||||| |||||||| ||    
T  49203157 attctgagttggctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagttaca 49203058  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 215  Q
     ||||| ||||| ||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| | |||||||| |||||||||    
T  49203057 aggtgaagttgaaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaaggttagt 49202961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 415 - 547
Target Start/End: Complemental strand, 49212193 - 49212066
Alignment:
Q  415 tatttgttttatggcaattttgttctaaattaattttgttaggaatgtgccaaatctaaatcgtggatcccttcgcttgctattattttgtgtacttttg 514  Q
    ||||| ||| ||| ||||||||||| |||||| |||||||| |||  |||||| |||||||| || |||||||     |||||||||||||||||||||     
T  49212193 tatttctttcatgacaattttgttccaaattagttttgttaagaacatgccaagtctaaatcatgaatccctt-----gctattattttgtgtactttta 49212099  T
Q  515 gtcaagtttgttgagttagcaaatgctatgttt 547  Q
     ||| ||||||||||||||||| | ||||||||    
T  49212098 ctcaggtttgttgagttagcaagtcctatgttt 49212066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 49207668 - 49207608
Alignment:
Q  356 tatcatttgctaaatttatgtatcattataaaactaaatcatatggtatgttcatataata 416  Q
    ||||||||||||||||| ||||||||||||||| ||||||||  |||||||||||||||||    
T  49207668 tatcatttgctaaatttctgtatcattataaaattaaatcattcggtatgttcatataata 49207608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 49207552 - 49207499
Alignment:
Q  490 cttgctattattttgtgtacttttggtcaagtttgttgagttagcaaatgctatg 544  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||| |||||||    
T  49207552 cttgctattattt-gtgtacttttactcaagtttgttgagttagcaagtgctatg 49207499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 49208089 - 49208053
Alignment:
Q  264 caaattgttttactagcaacaatattaatacttcaat 300  Q
    |||||||||||||||||||||| | ||||||||||||    
T  49208089 caaattgttttactagcaacaagagtaatacttcaat 49208053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 26756694 - 26756489
Alignment:
Q  19 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 118  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||    
T  26756694 attccgagttgactaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttgca 26756595  T
Q  119 gggtgaggttgagaggatgaatgctttgactactactgagaaacttaaagctgatt---tacttagcaaagctagtgttgagtatgaaaccaaggttagt 215  Q
     |||||||||||||||||||||||||||||||| |||||||| |||||| |||| |   || |||| |||||||||||  | ||||||||||||||||||    
T  26756594 aggtgaggttgagaggatgaatgctttgactaccactgagaagcttaaacctgagttcctaattagtaaagctagtgtaca-tatgaaaccaaggttagt 26756496  T
Q  216 ccatgca 222  Q
    |||||||    
T  26756495 ccatgca 26756489  T

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