View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7493_low_2 (Length: 246)
Name: NF7493_low_2
Description: NF7493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7493_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 31909139 - 31908927
Alignment:
| Q |
34 |
ataaaactcattttttagtgaaaataactgtatttgaaagctaatttatagtattatgatacttgaaagttgtgtaattttatattatttgtacattatt |
133 |
Q |
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| T |
31909139 |
ataaaactcattctttagtgaaaataactgtatttgaaagctaatttatagtattatgatacttgaaagttgtgtaattttatattatttgtacattatt |
31909040 |
T |
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| Q |
134 |
tcgtaatattatgaaatggattgttctgttttgcaagttaatgtgcatcagtcacaatagaacctctatatcttgagatagtaactccttttttagtgaa |
233 |
Q |
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| T |
31909039 |
tcgtaacattatgaaatgaattgttctgttttgcaagttaatgtgcatcagtcacaatagaacctctgtatcttgagatagtaactcctttttgagtgaa |
31908940 |
T |
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| Q |
234 |
accaattttgttt |
246 |
Q |
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| T |
31908939 |
accaattgtgttt |
31908927 |
T |
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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 18013982 - 18013820
Alignment:
| Q |
79 |
ttatagtattatgatacttgaaagttgtgtaattttatattatttgtacattatttcgtaatattatgaaatggattgttctgttttgcaagttaatgtg |
178 |
Q |
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| T |
18013982 |
ttatagttttatgatactcaaaagttgtgtaattttatattactttaacattattttgtgatattatgaagtggattgttatgttttacaaattactctg |
18013883 |
T |
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| Q |
179 |
catcagtcacaatagaacctctatatcttgagat-agtaactccttttttagtgaaaccaatt |
240 |
Q |
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| T |
18013882 |
catcagtcacaatagaacctttatatcatgagctaagaaactcctttttgaatgataccaatt |
18013820 |
T |
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