View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7493_low_4 (Length: 263)
Name: NF7493_low_4
Description: NF7493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7493_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 10331918 - 10331709
Alignment:
| Q |
37 |
actattttaggttttgactcactgataatttcgccaagtcaatagtcatcattaaaacaaattggtactttagtatctgccaactgccaccggaccaaag |
136 |
Q |
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| T |
10331918 |
actattttgggttttgactcact---aatttctccaagtcaatagtcatcattaaaacaaattggtactgtagtatctgccaactgccaccggaccaaaa |
10331822 |
T |
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| Q |
137 |
ccaaaacgcgcttctcattttcatcgctttctac--tctttttcctttaaatcattacaactttttccctcttccaattcaatcttttctcaaaaaacaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10331821 |
ccaaaacgcgcttctcattttcatcgctttctactttttttttcctttaaatcattacaactttttccctcttccaattcaatcttttctcaaaaaacaa |
10331722 |
T |
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| Q |
235 |
tggattttaaaac |
247 |
Q |
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||||||||||||| |
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| T |
10331721 |
tggattttaaaac |
10331709 |
T |
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