View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7493_low_6 (Length: 219)

Name: NF7493_low_6
Description: NF7493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7493_low_6
NF7493_low_6
[»] chr1 (3 HSPs)
chr1 (1-209)||(9883433-9883641)
chr1 (1-182)||(9260708-9260882)
chr1 (1-69)||(31917030-31917098)
[»] chr6 (2 HSPs)
chr6 (20-86)||(28912939-28913005)
chr6 (20-64)||(22427125-22427169)
[»] chr4 (3 HSPs)
chr4 (23-83)||(19100095-19100155)
chr4 (20-85)||(19314599-19314664)
chr4 (3-65)||(19328194-19328256)
[»] scaffold0050 (1 HSPs)
scaffold0050 (5-123)||(33412-33530)
[»] chr2 (1 HSPs)
chr2 (1-69)||(33851552-33851620)
[»] chr5 (1 HSPs)
chr5 (20-65)||(26332609-26332654)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-124)||(91723-91827)
[»] chr3 (1 HSPs)
chr3 (1-69)||(21304480-21304548)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9883641 - 9883433
Alignment:
Q  1 aaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattt 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883641 aaatatgtctcaaattcgtgtgtttgtttatgctttaatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattt 9883542  T
Q  101 tctaattttcaaatatatcttataacaatattttttgttcacatttgagtaatatccatttttcttatttgtctatatagctacctttccatgcgtttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883541 tctaattttcaaatatatcttataacaatattttttgttcacatttgagtaatatccatttttcttatttgtctatatagctacctttccatgcgtttct 9883442  T
Q  201 gatgatgat 209  Q
    |||||||||    
T  9883441 gatgatgat 9883433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9260882 - 9260708
Alignment:
Q  1 aaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattt 100  Q
    ||||||| |||||| || | | ||| |||||||||| | |||||||||||||||||| |||||||         || ||||||||||||||||| |||||    
T  9260882 aaatatggctcaaaatcttgtatttttttatgctttaaccatctttctatctcaattgcttgttg---------caggtatgtcatttttcacaccattt 9260792  T
Q  101 tctaattttcaaatatatcttataacaatattttttgttcacatttgagta--atatccatttttcttatttgtctatatagct 182  Q
    |||| ||| ||||| |||||||||||| |||||||||||||||||||||||  |||| ||||||||||| |||||||| |||||    
T  9260791 tctattttgcaaatctatcttataacattattttttgttcacatttgagtagtatattcatttttcttaattgtctatgtagct 9260708  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31917030 - 31917098
Alignment:
Q  1 aaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 69  Q
    |||||||  ||||||||  || |||||||||||||| ||||||||| | |||| |||||||||||||||    
T  31917030 aaatatgattcaaattctcatatttgtttatgctttgatcatctttatttctctatttcttgttgtaac 31917098  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 28912939 - 28913005
Alignment:
Q  20 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 86  Q
    ||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||| ||||| |||||    
T  28912939 atgtttgtttatgttttgatcatctttctttctcaatttcttattgtaaccagtagaagtaagtcat 28913005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 22427125 - 22427169
Alignment:
Q  20 atgtttgtttatgcttttatcatctttctatctcaatttcttgtt 64  Q
    |||||| |||||||||| |||||||||||||||| |||| |||||    
T  22427125 atgtttctttatgctttcatcatctttctatctctatttgttgtt 22427169  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 19100095 - 19100155
Alignment:
Q  23 tttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgt 83  Q
    |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||||||||    
T  19100095 tttgtttatgctttgatcatttttctttctcaatttcttgttataacaagtagaagtatgt 19100155  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19314599 - 19314664
Alignment:
Q  20 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtca 85  Q
    |||||| |||||||| | ||||||||||| ||||||||| |||||||||  | |||||||||||||    
T  19314599 atgtttatttatgctctgatcatctttctctctcaattttttgttgtaatcaatacaagtatgtca 19314664  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 19328194 - 19328256
Alignment:
Q  3 atatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 65  Q
    ||||| ||||||||  ||||||| |||||||||| ||||||||||| || | |||||||||||    
T  19328194 atatggctcaaattattatgtttttttatgctttgatcatctttctttccccatttcttgttg 19328256  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 33412 - 33530
Alignment:
Q  5 atgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattttcta 104  Q
    ||||||||||||   ||||||| ||||| ||| ||||||||||| |||| ||||| ||||| ||| | || | |||||| |||||| ||| ||||||| |    
T  33412 atgtctcaaattttcatgtttgcttatgttttgatcatctttctttctctatttcatgttgaaacaaatatacgtatgttatttttaacaacattttcaa 33511  T
Q  105 attttcaaatatatcttat 123  Q
    |||||| ||| ||| ||||    
T  33512 attttctaatttatattat 33530  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33851552 - 33851620
Alignment:
Q  1 aaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 69  Q
    ||||||| |||||||||  |||||  |||||| ||| ||||||||||| |||| |||||||||||||||    
T  33851552 aaatatggctcaaattctcatgttcatttatgttttgatcatctttctttctctatttcttgttgtaac 33851620  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 26332609 - 26332654
Alignment:
Q  20 atgtttgtttatgcttttatcatctttctatctcaatttcttgttg 65  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||    
T  26332609 atgtttgtttatgctttgatcaactttctttctctatttcttgttg 26332654  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 91723 - 91827
Alignment:
Q  20 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattttctaattttcaaatatatc 119  Q
    |||||||||  |||||| ||||||||||| |||| |||| | |||| ||| |  | ||||||||| ||||||||| |||||||  |||||| | | ||||    
T  91723 atgtttgttggtgctttgatcatctttctttctctatttttggttgaaaccaaaaaaagtatgtcttttttcacaccattttcatattttctagtttatc 91822  T
Q  120 ttata 124  Q
    |||||    
T  91823 ttata 91827  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21304548 - 21304480
Alignment:
Q  1 aaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 69  Q
    ||||||| ||||||||| ||  ||| ||||||||||||| ||| ||||||||  |||| ||||||||||    
T  21304548 aaatatggctcaaattcttaaatttatttatgcttttataatccttctatctttattttttgttgtaac 21304480  T

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