View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7494_high_10 (Length: 526)

Name: NF7494_high_10
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7494_high_10
NF7494_high_10
[»] chr1 (13 HSPs)
chr1 (19-303)||(1868232-1868516)
chr1 (19-301)||(1842625-1842907)
chr1 (18-245)||(1856695-1856922)
chr1 (18-260)||(1816122-1816364)
chr1 (370-494)||(1842456-1842580)
chr1 (18-266)||(9156035-9156283)
chr1 (18-298)||(9161947-9162227)
chr1 (26-266)||(9218864-9219104)
chr1 (26-245)||(9118278-9118497)
chr1 (370-506)||(1868029-1868165)
chr1 (18-266)||(9229741-9229989)
chr1 (26-245)||(9170781-9171000)
chr1 (26-245)||(9200348-9200567)
[»] chr7 (3 HSPs)
chr7 (76-260)||(37567622-37567806)
chr7 (18-74)||(37572123-37572179)
chr7 (377-493)||(37567453-37567569)
[»] chr3 (6 HSPs)
chr3 (31-134)||(40568360-40568463)
chr3 (31-135)||(40591265-40591369)
chr3 (18-107)||(40597775-40597864)
chr3 (18-134)||(40572961-40573077)
chr3 (18-134)||(40579418-40579534)
chr3 (18-115)||(40601935-40602032)
[»] chr2 (1 HSPs)
chr2 (46-134)||(2015288-2015376)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 1868516 - 1868232
Alignment:
Q  19 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1868516 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa 1868417  T
Q  119 ctacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacagt 218  Q
    | |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  1868416 ccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggt 1868317  T
Q  219 accaaaaccacctttgccaatgattaaattctcgtcaaagtttttggttgccttgtttagctgatcttgtgtgaatattttagca 303  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868316 accaaaaccacctttgccaatgattaaattctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattttagca 1868232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 1842907 - 1842625
Alignment:
Q  19 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  1842907 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataa 1842808  T
Q  119 ctacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacagt 218  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  1842807 ttacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcctttgtaaacagt 1842708  T
Q  219 accaaaaccacctttgccaatgattaaattctcgtcaaagtttttggttgccttgtttagctgatcttgtgtgaatattttag 301  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  1842707 accaaaaccacctttgccaatgattaaattctcgtcaaagtctttggtggccttgtttagctgatcttgtgtgaatattttag 1842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 1856922 - 1856695
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| || |||||||||||||||| ||||    
T  1856922 accattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaaca 1856823  T
Q  118 actacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacag 217  Q
     | |||||||| |||||||| |  ||||||||| | |||||| |||| ||||||||||||||||||||||| |||||||| ||    |||||| |||| |    
T  1856822 tccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactg 1856723  T
Q  218 taccaaaaccacctttgccaatgattaa 245  Q
    |||||||||| ||||| || ||||||||    
T  1856722 taccaaaacctcctttacctatgattaa 1856695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 1816122 - 1816364
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1816122 accattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaaca 1816221  T
Q  118 actacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacag 217  Q
     | ||||| || |||||||| |  |||||||||   |||||| |||| |||||||||||||| |||||||| |||||||| ||    ||||||||||| |    
T  1816222 tccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaactg 1816321  T
Q  218 taccaaaaccacctttgccaatgattaaattctcgtcaaagtt 260  Q
    |||||||||| ||| | || ||||||||  |||| ||||||||    
T  1816322 taccaaaacctcctctacctatgattaagctctcatcaaagtt 1816364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 370 - 494
Target Start/End: Complemental strand, 1842580 - 1842456
Alignment:
Q  370 aaaatcaaaccaccattctgctcaaagaatttctctttcattttgatgaatttcctcttatgatatattaagtacgagaatgtcccaaccaaaagaagaa 469  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  1842580 aaaatcagaccaccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaa 1842481  T
Q  470 taagtgttgctcctactcctgcatt 494  Q
    |||| ||||||||||||||||||||    
T  1842480 taagcgttgctcctactcctgcatt 1842456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 9156035 - 9156283
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    ||||||| |||| ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||| || || |||    
T  9156035 accattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttgggataggaca 9156134  T
Q  118 actacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacag 217  Q
    ||||||||||| || || || | ||||||  ||  ||||||||||||||| ||||| | |||||| ||| | || ||   || || |||||||||||| |    
T  9156135 actacctcattaataaactgctcgatttgatttgcatctattatttttgatttttttacagcaacgattttgttgtcgggtaaaactcctttgaaaactg 9156234  T
Q  218 taccaaaaccacctttgccaatgattaaattctcgtcaaagtttttggt 266  Q
    |||||||||| ||| ||||||||||||| || || ||  ||||||||||    
T  9156235 taccaaaacctcctctgccaatgattaagttttcatcgtagtttttggt 9156283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 9161947 - 9162227
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    ||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||||    
T  9161947 accattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttgggacagaaca 9162046  T
Q  118 actacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacag 217  Q
    |||||||| || ||||| || |  |||||  ||  |||||||||||| || ||||||| ||| || ||| | |||||   ||  | |||||||||||| |    
T  9162047 actacctcgttaatgaactgctcaatttgatttgcatctattattttggattttttgacagcgacgattttgttatctggtaagactcctttgaaaactg 9162146  T
Q  218 taccaaaaccacctttgccaatgattaaattctcgtcaaagtttttggttgccttgtttagctgatcttgtgtgaatattt 298  Q
    |||||||||| ||| |||| ||||||||  | || ||  |||||||||| || || ||||| |  |||| |||||||||||    
T  9162147 taccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatattt 9162227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 9218864 - 9219104
Alignment:
Q  26 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctc 125  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| || ||||||||||||||    
T  9218864 taacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctc 9218963  T
Q  126 attgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacagtaccaaaa 225  Q
    ||| |||||||| | ||| ||  ||   ||||||||||| |||||||||| ||| |||||| | |||||    | || |||||||||||| |||||||||    
T  9218964 attaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaattcctttgaaaactgtaccaaaa 9219063  T
Q  226 ccacctttgccaatgattaaattctcgtcaaagtttttggt 266  Q
    || ||| | || ||||||||  | |||||  ||||||||||    
T  9219064 cctcctctaccgatgattaagctttcgtcgtagtttttggt 9219104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 245
Target Start/End: Complemental strand, 9118497 - 9118278
Alignment:
Q  26 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctc 125  Q
    |||| |||||||| |||||  |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| || |||| |||||||||    
T  9118497 taacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttgggacagaataactacctc 9118398  T
Q  126 attgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacagtaccaaaa 225  Q
    ||| |||||||| | ||||||  ||   ||||||||| | |||||||||| ||| || ||||| |||||   || || |||||||||||  ||||| |||    
T  9118397 attaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatcgggtaaaactcctttgaaaattgtaccgaaa 9118298  T
Q  226 ccacctttgccaatgattaa 245  Q
    || ||| | |||||||||||    
T  9118297 cctcctcttccaatgattaa 9118278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 506
Target Start/End: Complemental strand, 1868165 - 1868029
Alignment:
Q  370 aaaatcaaaccaccattctgctcaaagaatttctctttcattttgatgaatttcctcttatgatatattaagtacgagaatgtcccaaccaaaagaagaa 469  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |  || |||||||    
T  1868165 aaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttcctcttatggtacattaagtacgagaatgttcccaaaaagagaagaa 1868066  T
Q  470 taagtgttgctcctactcctgcattcagaatatatca 506  Q
    ||| ||||  |||||||||||||  || |||||||||    
T  1868065 taaatgttattcctactcctgcacgcaaaatatatca 1868029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 9229741 - 9229989
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    ||||||| ||| |||||||||||| |  |||||||||| |||||| |||||||| |||||||||||||| ||||| |||||||||||||| || | ||||    
T  9229741 accattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttgggacaaaaca 9229840  T
Q  118 actacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacag 217  Q
    || |||||||| |||||||| |  | |||| |   ||| |||||||| ||||| ||||| |||||||| || || ||  |||||| ||||||| |||| |    
T  9229841 accacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgtaaaccg 9229940  T
Q  218 taccaaaaccacctttgccaatgattaaattctcgtcaaagtttttggt 266  Q
    |||| ||||| ||| ||||||| |||||| |||| ||| |||| |||||    
T  9229941 taccgaaacctcctctgccaattattaaactctcctcatagttgttggt 9229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 9170781 - 9171000
Alignment:
Q  26 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctc 125  Q
    |||||||||| || |||||  |||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||| |  ||||||||||||||    
T  9170781 taacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctc 9170880  T
Q  126 attgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacagtaccaaaa 225  Q
    ||| |||||||| |  |||||  ||   || |||||||| || ||||| | ||| || ||| | || |||  || || ||||||| |||| |||||||||    
T  9170881 attaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacgattttgttgtcaggtaaaactcctttgtaaactgtaccaaaa 9170980  T
Q  226 ccacctttgccaatgattaa 245  Q
    || ||| |||||||||||||    
T  9170981 cctcctctgccaatgattaa 9171000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 9200348 - 9200567
Alignment:
Q  26 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctc 125  Q
    |||||||||| || || ||  |||||||||||||||||| |||||| || | ||||||||| |||||||||||||||||||| |  ||||||||||||||    
T  9200348 taacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctc 9200447  T
Q  126 attgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaaacagtaccaaaa 225  Q
    ||| |||||||| |  |||||  ||   || |||||||| || ||||| | ||| |||||| | ||||||  || || ||||||| |||| |||||||||    
T  9200448 attaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttgtaaactgtaccaaaa 9200547  T
Q  226 ccacctttgccaatgattaa 245  Q
    || ||| | || ||||||||    
T  9200548 cctcctctaccgatgattaa 9200567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 37567806 - 37567622
Alignment:
Q  76 aagagtttgaccacattcctatgatttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttga 175  Q
    ||||||||||||||||||||||||||||||||||||| ||   | |||||||| |||||||| |   ||||||||  ||||||| |||| || |||||||    
T  37567806 aagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttttga 37567707  T
Q  176 tagcaacaattcttttatcatctagaaatcctttgaaaacagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtt 260  Q
    |||||||| |||| |||||||||||    ||||||||||| ||||||||||| ||| | || ||| |||| ||||| ||||||||    
T  37567706 tagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatggttaagttctcatcaaagtt 37567622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 37572179 - 37572123
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccc 74  Q
    ||||||| ||||||| ||||||||||||  |||||||||||| |||| |||||||||    
T  37572179 accattgctaacaaactcataaaccaaccgaggaacttctgtttctagacaacaccc 37572123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 493
Target Start/End: Complemental strand, 37567569 - 37567453
Alignment:
Q  377 aaccaccattctgctcaaagaatttctctttcattttgatgaatttcctcttatgatatattaagtacgagaatgtcccaaccaaaagaagaataagtgt 476  Q
    |||| |||||||||  ||||||||||||||||| |||||  | |||||| || || ||||||||||| || | | |||  || || |||| ||||| |      
T  37567569 aacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtatattaagtaggatattatccacacaaatagaacaataaatac 37567470  T
Q  477 tgctcctactcctgcat 493  Q
    |||||||||||||||||    
T  37567469 tgctcctactcctgcat 37567453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 40568463 - 40568360
Alignment:
Q  31 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctcattga 130  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||||| || |||||||| ||||| || ||||| || ||||| || || |||||||    
T  40568463 aattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttcattga 40568364  T
Q  131 tgaa 134  Q
    ||||    
T  40568363 tgaa 40568360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 40591369 - 40591265
Alignment:
Q  31 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctcattga 130  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | |||||||| ||||| || |||||||| ||||| || || |||||||    
T  40591369 aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccacttcattga 40591270  T
Q  131 tgaat 135  Q
    |||||    
T  40591269 tgaat 40591265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 40597864 - 40597775
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttg 107  Q
    |||||||| || |||||||||||| | ||| ||||||||||| ||||||||||| || |  ||||| |||||||||||||| || |||||    
T  40597864 accattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttg 40597775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 40573077 - 40572961
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    |||||||| || ||||||||| || |  || ||||||||||||||||||||||| |||||||  || |||||||| ||||| || ||||| || || ||     
T  40573077 accattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacg 40572978  T
Q  118 actacctcattgatgaa 134  Q
    || || |||||||||||    
T  40572977 accacttcattgatgaa 40572961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 40579534 - 40579418
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaaca 117  Q
    |||||||| || |||||| ||||| |  || ||||||||||||||||||||||| ||||| |  || |||||||| |||||||| ||||| || ||||      
T  40579534 accattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaatg 40579435  T
Q  118 actacctcattgatgaa 134  Q
    || || |||||||||||    
T  40579434 accacttcattgatgaa 40579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 40602032 - 40601935
Alignment:
Q  18 accattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaa 115  Q
    |||||||| || ||| |||||||| | ||| ||||||||||| |||||||| || ||||| || |  |||||||| ||||| || |||||||| ||||    
T  40602032 accattggaaataaactcataaacaagcaatggaacttctgtttctaaacagcaacccaaaagctgtaccacatttctatggttgatttgagaaagaa 40601935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 2015288 - 2015376
Alignment:
Q  46 aaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatgatttatttgagagagaacaactacctcattgatgaa 134  Q
    |||||||||||||||||||||||||| |||||||| || |||||||| ||||| || ||||| || || ||||  || |||||||||||    
T  2015288 aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaa 2015376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University