View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_13 (Length: 503)
Name: NF7494_high_13
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 11000675 - 11001146
Alignment:
| Q |
16 |
atcttggagaggactgaaaatgatagggcacaggttcagttgatggaacaacaatttcagcaggaggttatgatgcttgctacattgaagcatcctaata |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000675 |
atcttggagaggactgagaatgatagggcacaggttcagttgatggaacaacaatttcagcaggaggttatgatgcttgctacattgaagcatcctaata |
11000774 |
T |
|
| Q |
116 |
tagttcgtttcataggtgcatgccgtaaacctatggtctggtgcatcgttactgagtatgctaagggtggatcagttcgacagttcttaaaccagcgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11000775 |
tagttcgtttcataggtgcatgccgtaaacctatggtctggtgcatcgttactgagtatgctaagggtggatcagttcgacagttcttaaaccaacgtca |
11000874 |
T |
|
| Q |
216 |
aaaccgagcagttccccttaaacaagctgtcaaacaagctttggatgttgcaagaggcatggcttatgttcatggtctagggttgattcacagggacttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000875 |
aaaccgagcagttccccttaaacaagctgtcaaacaagctttggatgttgcaagaggcatggcttatgttcatggtctagggttgattcacagggacttg |
11000974 |
T |
|
| Q |
316 |
aaatctgacaacctattgatttttggtgacaagtcaatcaaaattgctgactttggagtggctcggattgaggtgcacactgaaggaatgactcccgaga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000975 |
aaatctgacaacctattgatttttggtgacaagtcaatcaaaattgctgactttggagtggctcggattgaggtgcacactgaaggaatgactcccgaga |
11001074 |
T |
|
| Q |
416 |
ctggaacataccgttggatggctccggagatgatccaacataggccttacacacataaagtggatgtatata |
487 |
Q |
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| T |
11001075 |
ctggaacataccgttggatggctccggagatgatccaacataggccttacacacataaagtggatgtatata |
11001146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 42403927 - 42403502
Alignment:
| Q |
16 |
atcttggagaggactgaaaatgatagggcacaggttcagttgatggaacaacaatttcagcaggaggttatgatgcttgctacattgaagcatcctaata |
115 |
Q |
| |
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||||||||||| |||||||||||| || ||| ||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| || | |
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| T |
42403927 |
atcttggagagacctgaaaatgatacatcaaaggctcagttgatggaacagcaatttcaacaggaggttatgatgctggctaccctgaagcatcccaaca |
42403828 |
T |
|
| Q |
116 |
tagttcgtttcataggtgcatgccgtaaacctatggtctggtgcatcgttactgagtatgctaagggtggatcagttcgacagttcttaaaccagcgtca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||| | |||| || |
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| T |
42403827 |
tagttcgtttcataggtgcatgccgtaaacctatggtgtggtgcattgttactgagtatgctaagggtggatctgttcggcagttcttaaccaagcgcca |
42403728 |
T |
|
| Q |
216 |
aaaccgagcagttccccttaaacaagctgtcaaacaagctttggatgttgcaagaggcatggcttatgttcatggtctagggttgattcacagggacttg |
315 |
Q |
| |
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||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||| |
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| T |
42403727 |
aaaccgatcagttcccctcaaactagctgtcaaacaagctttggatgttgcaagaggcatggcatatgttcatggtctgggattgatccacagggacttg |
42403628 |
T |
|
| Q |
316 |
aaatctgacaacctattgatttttggtgacaagtcaatcaaaattgctgactttggagtggctcggattgaggtgcacactgaaggaatgactcccgaga |
415 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
42403627 |
aaatccgacaaccttttgatttttggtgacaagtcaatcaaaattgccgactttggagtagctcggattgaggtgcaaactgaaggaatgactcccgaga |
42403528 |
T |
|
| Q |
416 |
ctggaacataccgttggatggctccg |
441 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42403527 |
ctggaacataccgttggatggctccg |
42403502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 42401868 - 42401822
Alignment:
| Q |
441 |
ggagatgatccaacataggccttacacacataaagtggatgtatata |
487 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42401868 |
ggagatgatccaacataggccttacacacagaaagtggatgtatata |
42401822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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