View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_15 (Length: 492)
Name: NF7494_high_15
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 10210060 - 10210545
Alignment:
| Q |
1 |
tcattgaagcttttcttctaaaagaaagagactaagatacagaggcttctttctccccttggtggttaagaatgcaggtgatnnnnnnngttgagagatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10210060 |
tcattgaagcttttcttctaaaagaaagagactaagatacagaggcttctttctccccttggtggttaagaatgcaggtgataaaaaaagttgagagatt |
10210159 |
T |
|
| Q |
101 |
agagtaggatcatttgatccctatatatccttaataaaatacttacagtattaacaa-acatgaaattacagtaaggggctacaatgtttagtgtgcaat |
199 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210160 |
agagtgggatcatttgatccctatatatccttaataaaatacttacagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaat |
10210259 |
T |
|
| Q |
200 |
aagacttcagattaatcctatcttttttccccttaagttagtcctttatgttccaaaaggttaacaccattgacatttcatttcattctgttnnnnnnnn |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10210260 |
aagacttcagattaatcctatcttttttccccttaagttcgtcctttatgttccaaaaggttaacaccattgacatttcatttcattccgttaaaaaaaa |
10210359 |
T |
|
| Q |
300 |
nttaacatttgtcgatgcctttctcatgtttaatatacccttgcttaacaaaatgccgagattaaatctgtcttacatctaa---gaggatacaccacag |
396 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10210360 |
attaacatttgtcgatgcctttctaatgtttaatatacccttgcttaacaaaatgccgagattaaatctgtcttacatctaagaggaggatacaccacag |
10210459 |
T |
|
| Q |
397 |
agcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctg |
482 |
Q |
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| T |
10210460 |
agcaattttgatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctg |
10210545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 10109057 - 10108667
Alignment:
| Q |
1 |
tcattgaagcttttcttctaaaagaaagagactaagatacagaggcttctttctccccttggtggttaagaatgcaggtgatnnnnnnngttgagagatt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||| | |
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| T |
10109057 |
tcattgaaacttttcttctaaaagaaagagactaagatacagaggcttctttctccctttggtggttg-gaacacaggtgataaaaaa-gttgagata-- |
10108962 |
T |
|
| Q |
101 |
agagtaggatcatttgatccctatatatccttaataaaatacttacagtattaacaa-acatgaaattacagtaaggggctacaatgtttagtgtgcaat |
199 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| | | ||| |||| | |
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| T |
10108961 |
agagtgggagaattttatccctatatatccttaataaaatacttacagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagt |
10108862 |
T |
|
| Q |
200 |
a--agacttcagattaatc--ctatcttttttccccttaagttagtcctttatgttccaaaaggttaacaccattgacatttcatttcattctgttnnnn |
295 |
Q |
| |
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| ||||||| |||||||| || ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||| || || | |
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| T |
10108861 |
aagagacttcggattaatcctctgtcttttttccccttaagttggtcctttatgtttcaaaaggttaacaacattgaccttt-------ttttgct-taa |
10108770 |
T |
|
| Q |
296 |
nnnnnttaacatttgtcgatgcctttctcatgtttaatatacccttgcttaacaaaatgccgagattaaatctgtcttacatctaagaggatacaccaca |
395 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| ||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
10108769 |
gaaaattaacatgtgttgatgcctttctcatgtttaatatgcccctgcttaagaaaatgcagagatttaatctgtcttacatctaagaggatacaccaca |
10108670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 314 - 477
Target Start/End: Original strand, 10216171 - 10216333
Alignment:
| Q |
314 |
atgcctttctcatgtttaatatacccttgcttaacaaaatgccgagattaaatctgtcttacatctaagaggatacaccacagagcaattttgatacatc |
413 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10216171 |
atgcctttctcatgtttaatatacccctgcttaacaaaatgcattaatttaatttgtcttacatctaagaggatacaccacagagcaattt-gatacatc |
10216269 |
T |
|
| Q |
414 |
tggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatct |
477 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10216270 |
tggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatct |
10216333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 321 - 473
Target Start/End: Original strand, 9683004 - 9683149
Alignment:
| Q |
321 |
tctcatgtttaatatacccttgcttaacaaaatgccgagattaaatctgtcttacatctaagaggatacaccacagagcaattttgatacatctggctgt |
420 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||| |||||||||||||||| | |
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| T |
9683004 |
tctcatgtttaatatgcccttgattaacaaaatgcagagattaaaactttcttacatctaggaggataaaccacagagcaa-tttgatacatctggcttt |
9683102 |
T |
|
| Q |
421 |
atgaaactcctggacctggtgatgcatattcccttagccaccattcctttaat |
473 |
Q |
| |
|
||| |||| ||| ||||||||||||||| |||| |||||||||||||| |
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|
| T |
9683103 |
atggaact------ccttgtgatgcatattcccctagcaaccattcctttaat |
9683149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10212651 - 10212732
Alignment:
| Q |
1 |
tcattgaagcttttcttctaaaagaaagagactaagatacagaggcttctttctccccttggtggttaagaatgcaggtgat |
82 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
10212651 |
tcattgaagcttttcttccaaaagaaagagaccaaggtacagaggcttctttctctccttggtggttgacaatgcaggtgat |
10212732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10105626 - 10105560
Alignment:
| Q |
1 |
tcattgaagcttttcttctaaaagaaagagactaagatacagaggcttctttctccccttggtggtt |
67 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
10105626 |
tcattgaagcttttcttccaaaagaaagagactaagatacagaggcttctttctcttcttggtggtt |
10105560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 415
Target Start/End: Original strand, 9675108 - 9675208
Alignment:
| Q |
317 |
cctttctcatgtttaatatacccttg---cttaacaaaatgccgagattaaatctgtcttacatctaagaggatacaccacagagcaattttgatacatc |
413 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||| |||||||||||||| |||||| || |||||||||||||| ||||| ||||||||||| |
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|
| T |
9675108 |
cctttctcatgtttaatatgcccctgatgcttaacaaaatgcagagattaaatctgttttacatttaggaggatacaccacatagcaa-tttgatacatc |
9675206 |
T |
|
| Q |
414 |
tg |
415 |
Q |
| |
|
|| |
|
|
| T |
9675207 |
tg |
9675208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 13855735 - 13855603
Alignment:
| Q |
122 |
tatatatccttaataaaatactta-cagtattaacaaa-catgaaattacagtaaggggctacaatgtttagtgtgcaata--agacttcagattaatcc |
217 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||||||||| || ||||||| ||||| |
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|
| T |
13855735 |
tatatatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggatta---- |
13855640 |
T |
|
| Q |
218 |
tatcttttttccccttaagttagtcctttatgttccaa |
255 |
Q |
| |
|
||||||||| |||||||||| ||||||| | |||||| |
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| T |
13855639 |
-atctttttttcccttaagttggtcctttgttttccaa |
13855603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 10108665 - 10108616
Alignment:
| Q |
434 |
acctggtgatgcatattcccttagccaccattcc-tttaatatctctctg |
482 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10108665 |
accttgtgatgcatattcccttagccaccattccttttaatatctctctg |
10108616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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