View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_16 (Length: 487)
Name: NF7494_high_16
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 52 - 483
Target Start/End: Complemental strand, 29809263 - 29808826
Alignment:
| Q |
52 |
tatattaaatgatttttgagtgtcagattgtttttcatctttcctt-gagtgattgttctctcttgtcaaaaattgtgtgtccaaacaatacaactgcta |
150 |
Q |
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| T |
29809263 |
tatattaaatgatttttgagtttcagattgtttttcatctttccttagagtgattgttctctctcgtcaaaaattgtgtgtccaaacaatacaactgcta |
29809164 |
T |
|
| Q |
151 |
attttgttcttccttttttcttgaannnnnnn---attcttccttaaaaa--ggtttgatattattcctcaatatcaaaactcatcaatcaatatttggc |
245 |
Q |
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| T |
29809163 |
attttgttcttccttttttcttgatttttttttttattcttccttaaaaaaaggtttgatattattcctcaatatcaaaactcatcaatcaagatttggc |
29809064 |
T |
|
| Q |
246 |
tcttaaagtgagaatgcaatttataaagtcagaacaacattatttgaagatgacattatttgagaatgacgtgacggcacacatatcagttcccacttca |
345 |
Q |
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| T |
29809063 |
tcttaaagtgagaatgcaatttataaagtcagaacaacattatttgaagatgacattatttgagaatgacgtgacggcacacatatcagttcccacttca |
29808964 |
T |
|
| Q |
346 |
caaaaccttcctcacacacatatatactgatgaacattataagaaatgtaattaaaatgatcgtaacaaaatatactatgttcgtcatcttggtgcgaca |
445 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29808963 |
gaaaaccttcctcacacacatatgtactggtgaacattataagaaatgtaattaaaatgatcgtaacaaaatatactatgttcgtcgtcttggtgcgaca |
29808864 |
T |
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| Q |
446 |
atattttaatttcacgtattgttgatgatattcttcga |
483 |
Q |
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| T |
29808863 |
atattttaatttcacgtattgttgatgattttgttcga |
29808826 |
T |
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