View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_17 (Length: 480)
Name: NF7494_high_17
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Complemental strand, 113545 - 113097
Alignment:
| Q |
21 |
catcatgcaacaaacaagaagcatatgaatattagggaatgctcaaatagtagtaataagagttttattctgttctcagagctctctcaagacttgatgc |
120 |
Q |
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| T |
113545 |
catcatgcaacaaacaagaagcatatgaatattaggcaatgctcaaatagtagtaataagagttttattctgttctcagagctctctcaagacttgatgc |
113446 |
T |
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| Q |
121 |
ttcctatccttactttgcttccttttaagtgtctgcttaactctgcaaggtacgtctccaaatcttgggccactgctatctcagcctacctacctcttaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
113445 |
ttcctatccttactttgcttccttttaagtgtcttcttaactctgcaaggtacgtctccaaatcttgggccactgctatctcagcctacctacctcttaa |
113346 |
T |
|
| Q |
221 |
accacctggtctttacgttttcaagaccaactcaacaacaaattcttatttcttgaatattcaagatcatgttaatcgacaacctgaaaggattactttg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
113345 |
accacctggtctttacgttttcaagaccaactcaacgacaaattcttatttcttgaatattcaagatcatgttaattgacaacctgaaaggattactttg |
113246 |
T |
|
| Q |
321 |
ggaacaccttccaaaatgggacgtgtaatggctacttgtaatggcatattactgctttgtactttttccacactaacttttgcagtaaaccccatcctta |
420 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
113245 |
ggaacaccttccaaaatgggacttgtaatggctacttgtcatggcattttactgctttgtactttttctacactaacttttgcagtaaaccccatcctta |
113146 |
T |
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| Q |
421 |
agtgctgctttagaattccaaatccacccactaattcaaaatgcttcat |
469 |
Q |
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| T |
113145 |
agtgctgctttagaattccaaatccacccactaattcaaaatgcttcat |
113097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 27360224 - 27360367
Alignment:
| Q |
96 |
tcagagctctctcaagacttgatgcttcctatccttactttgcttccttttaagtgtctgcttaactctgcaaggtacgtctccaaatcttgggccactg |
195 |
Q |
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|||||||||||||||||| |||||||| |||||||| ||| ||||| |||| ||| | ||||||||||||||||||||||||||| |||| | |||| |
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| T |
27360224 |
tcagagctctctcaagacgtgatgcttgctatcctttgtttagttcctcttaactgtttacttaactctgcaaggtacgtctccaaacattggtctactg |
27360323 |
T |
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| Q |
196 |
ctatctcagcctacctacctcttaaaccacctggtctttacgtt |
239 |
Q |
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| T |
27360324 |
ctattccatcctgccttcaacttaaaccacccggtctctacgtt |
27360367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 27369582 - 27369725
Alignment:
| Q |
96 |
tcagagctctctcaagacttgatgcttcctatccttactttgcttccttttaagtgtctgcttaactctgcaaggtacgtctccaaatcttgggccactg |
195 |
Q |
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|||||||||||||||||| |||||||| |||||||| ||| ||||| |||| ||| | ||||||||||||||||||||||||||| |||| | |||| |
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| T |
27369582 |
tcagagctctctcaagacgtgatgcttgctatcctttgtttagttcctcttaactgtttacttaactctgcaaggtacgtctccaaacattggtctactg |
27369681 |
T |
|
| Q |
196 |
ctatctcagcctacctacctcttaaaccacctggtctttacgtt |
239 |
Q |
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|||| || ||| ||| | ||||||||||| ||||| |||||| |
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| T |
27369682 |
ctattccatcctgccttcaacttaaaccacccggtctctacgtt |
27369725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 27360505 - 27360554
Alignment:
| Q |
392 |
actaacttttgcagtaaaccccatccttaagtgctgctttagaattccaa |
441 |
Q |
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| T |
27360505 |
actaacttttgcagtaaaccctatccttaagtcctgctttaaaattccaa |
27360554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 9902181 - 9902262
Alignment:
| Q |
109 |
aagacttgatgcttcctatccttactttgcttccttttaagtgtctgcttaactctgcaaggtacgtctccaaatcttgggc |
190 |
Q |
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||||||||||| || ||||||||||||| ||||| || | |||||| | |||||||||||||| || | |||| ||||||| |
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| T |
9902181 |
aagacttgatgttttatatccttactttggttcctcttgattgtctgatcaactctgcaaggtatgtttgcaaaccttgggc |
9902262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 4145122 - 4145196
Alignment:
| Q |
125 |
tatccttactttgcttccttttaagtgtctgcttaactctgcaaggtacgtctccaaatcttgggccactgctat |
199 |
Q |
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| T |
4145122 |
tatccttagttttctccctgttaaatgtctgcttaactctgcaaggtatgtttgcaaatcttgggctactactat |
4145196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 5055047 - 5054959
Alignment:
| Q |
102 |
ctctctcaagacttgatgcttcctatccttactttgcttccttttaagtgtctgcttaactctgcaaggtacgtctccaaatcttgggc |
190 |
Q |
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|||||| ||||||||||| ||| |||| |||||||| ||||| |||| | ||| |||||||| ||||||| || | |||||| ||||| |
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| T |
5055047 |
ctctctgaagacttgatgtttcatatctttactttggttcctattaactcactgtttaactctacaaggtatgtatgcaaatcatgggc |
5054959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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