View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_18 (Length: 460)
Name: NF7494_high_18
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 38091733 - 38091299
Alignment:
| Q |
9 |
cattatactagtctcagatgcaagtgatggaatactttgttcatatttgaaaaaattacttggatcaattgcagttttaacctctacaagcctatcaaag |
108 |
Q |
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| T |
38091733 |
cattatactagtctcagatgcaagtgatggaatactttgttcatatttgaaaaaattacttggatcaattgcagttttaacctctacaagcctatcaaag |
38091634 |
T |
|
| Q |
109 |
tttcctttgaaatactttttaccccaaatactagctttttcataactaacatccccatctccattgacacctatatcaacatctctatagttcacatatg |
208 |
Q |
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| T |
38091633 |
tttcctttgaaatactttttaccccaaatactagctttttcataactaacatccccatctccattgacacctatatcaacatctctatagttcacatatg |
38091534 |
T |
|
| Q |
209 |
aacttcttggtgaatttgacacataaggtgtcatgtaatcataaagctttcgaatccgatccaaatattgattcgcaacatcattactttcttctttcca |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38091533 |
aacttcttggtgaatctgacacataaggtgtcatgtaatcataaagctttcgaatccgatccaaatattgattcgcaacatcattactttcttctttcca |
38091434 |
T |
|
| Q |
309 |
gttaactgaatactgaattttatatatgttacctgctctatgtgggaatggtgttgccatctcagaaatctcactcattttcccaccataaggattgaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38091433 |
gttaactgaatactgaattttatatatgttacctgctctatgtgggaatggtgttgccatctcagaaatctcacccattttcccaccataaggattgaat |
38091334 |
T |
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| Q |
409 |
gtgagtgaaacctttcctagttcaatcatcttctt |
443 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
38091333 |
gtgagtgaaacctttcctagttcaatcatcttctt |
38091299 |
T |
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