View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_2 (Length: 973)
Name: NF7494_high_2
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 343 - 960
Target Start/End: Original strand, 24061361 - 24061978
Alignment:
| Q |
343 |
acacaaaatgcttgtttgtgggtctccagctcccgtaattgtgggaacctccgacccaaaaatgaatgagatgcttaacaacatcgtttaaaccgtgcat |
442 |
Q |
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| T |
24061361 |
acacaaaatgcttgtttgtgggtctccagctcccgtagttgtgggaacctccgacccaaaaatgaatgagatgcttaacaacatcgtttaaaccttgcat |
24061460 |
T |
|
| Q |
443 |
caccataataaggtgaccgaggagcaaaacatatgtcttttcgtatgagggaacaacaagcaattgtggaaaaaccaagatattgtcacgatcactccac |
542 |
Q |
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| T |
24061461 |
caccataataaggtgaccgaggagcaaaatatatgtcttttcgaatgagggaacaacaagcaaatgtggaaaaaccaagacattgtcacgatcactccac |
24061560 |
T |
|
| Q |
543 |
gacacctcagtcttatcaaattggaggagtgtaacccctgagagaccaaggtccccgcgacattctcaagtcgaaaaagtatagaggtccatgtgactaa |
642 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24061561 |
aacacctcagtcttatcaaattggaggagtgtaacccctgagagaccaaggtccccgcgacattctcaggtcgaaaaagtatagaggtccatgtgactaa |
24061660 |
T |
|
| Q |
643 |
aacatcaaacaaagggaaaacctcgtcattcacgttcctcgtctcgagatgatgatgaacatggtcctcaaggtccactcacaaggagaattcaagaagc |
742 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24061661 |
aacatcaaacaaagggaaaacctcgtcattcacgttcctcgtctcgagatgatgatgaacatggtcctcaaggtccactcacaaggagaattcaagaagc |
24061760 |
T |
|
| Q |
743 |
gtgcattcaaacatgcttggagatgcctccacaaatatatccatacgatagaaccactgatctagacgagcctatcaaaaacattgaagccatcatcgac |
842 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24061761 |
gtgcattcaaacatgcttggagatgtctccacaaatatatccatacgatagaaccactgatctagacgagcctatcaaaaacattgaagccatcatcgac |
24061860 |
T |
|
| Q |
843 |
taccgtaacttttggggagcagtccaatgtagattgttcgctacaacactacaaaaaggagcaataaacatggtaaaaaagtctgagaataaagtccatt |
942 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
24061861 |
tacaataacttttggggagcggtccaatgtagattgttcgctacaacactacaaaaaggagcaataaacatggtagaaaagtctgagaattaagtccatt |
24061960 |
T |
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| Q |
943 |
tacttgggatgaaatatg |
960 |
Q |
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| T |
24061961 |
tacttgggatgaaatatg |
24061978 |
T |
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