View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_20 (Length: 422)
Name: NF7494_high_20
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 150 - 392
Target Start/End: Complemental strand, 18472334 - 18472071
Alignment:
| Q |
150 |
aatacattcctttcaattgaaggactttacatctctagtcattaaacttgagagcatttattgcctttcaaaagtgttatatgctggttatttgacacag |
249 |
Q |
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| T |
18472334 |
aatacattcctttcaattgaaggactttacatctatagtcattaaacttaagagcatttatttcccttcaaaattgttataggctggttatttgacacag |
18472235 |
T |
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| Q |
250 |
tgatcgtgcaa-accatcacactgtttcaatgaatgtatccacgca--------------------tcactatcagctcagctcacatatttcacaaagc |
328 |
Q |
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| T |
18472234 |
tgatcgtgcaacaccatcacactgtttcaatgaatgtatccacgcatcagtccgacaacaccaacgtcactatcagctcagctcacatatttcacaaagc |
18472135 |
T |
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| Q |
329 |
atacaaagtgcagaatgtggggagcatttttgcaaattaaatgaagcagagtcacaattctttg |
392 |
Q |
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| T |
18472134 |
atacaaagtgcagaatgtggggagcattttcgcaaattaaatgaagcagagtcacaattctttg |
18472071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 18472471 - 18472359
Alignment:
| Q |
41 |
gatgcatcactgtctaaacatgatagtgacacaagctttcaacaagtgctccattttatcgaccacgggtcatcgacatcattgtcggtacaggttctta |
140 |
Q |
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| T |
18472471 |
gatgcatcactgtctaaacatgatagtgacacaagctttcaacaagtcctccaatttatcgaccacgggtcatcgacatcattgtcgatacaggttctta |
18472372 |
T |
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| Q |
141 |
agactcttaaata |
153 |
Q |
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| T |
18472371 |
agactcttaaata |
18472359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 30437703 - 30437776
Alignment:
| Q |
306 |
tcagctcacatatttcacaaagcatac-aaagtgcagaatgtggggagcatttttgcaaattaaatgaagcagag |
379 |
Q |
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| T |
30437703 |
tcagctctcatatttcacaaagcatacaaaattgcagaaggtgtagag-aattttgcaaattaaatgaagcagag |
30437776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 30437533 - 30437589
Alignment:
| Q |
150 |
aatacattcctttcaattgaaggactttacatctctagtcattaaacttgagagcat |
206 |
Q |
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| T |
30437533 |
aataaattcttttcgattgaaggattttacatctctagttgttaaacatgagagcat |
30437589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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