View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_21 (Length: 412)
Name: NF7494_high_21
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 8119741 - 8119374
Alignment:
| Q |
14 |
acatcaattaattaatatattatttggttctagatatggtccctagtatctgccggccattatgttgcttcaactactagattgcttgcaattgcaa--- |
110 |
Q |
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| T |
8119741 |
acatcaattaattaatat--tatttggttctagatatggtccctagtatctgccggccattatgttgcttcacctactagattgcttgcaattgcaattt |
8119644 |
T |
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| Q |
111 |
----acatggtttccctttgcatcaatttctattgaaattgattacccaccaatcatgcagcctaaaaagtaatctcgagttcatccaataattcgccat |
206 |
Q |
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| T |
8119643 |
gcaaacatggtttccctttgcatc------tattgaaattgattacccaccaatcatgctgcctaaaaagtaatctcgagttcatccaataattcgtcat |
8119550 |
T |
|
| Q |
207 |
ttgacaaaactcattaatctctttgtttaatctataggtgcacaatggtaaattttttaccgtaattattttgagaagtaaaaataaagtaactaacctt |
306 |
Q |
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| T |
8119549 |
ttgacaaaactcattaatcgctttgtttaatcaataggtgcacaatggtaaatttttta---------------gaagtaaaaataaagtaactaacctt |
8119465 |
T |
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| Q |
307 |
gtggtaggagaagaacaaaatgtgatagtataatctactgcatttgcacaagtgaaagtgctggtcttatcatcatatgcatagctatatg |
397 |
Q |
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| T |
8119464 |
gtggtaggagaagaacaaaatgtgatagtataatctactgcatttgcacaagtgaaagtgctggtcttatcatcatatgcatagctatatg |
8119374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 27388704 - 27388744
Alignment:
| Q |
355 |
caagtgaaagtgctggtcttatcatcatatgcatagctata |
395 |
Q |
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| T |
27388704 |
caagtgaaagtgctgctcttatcatcgtaagcatagctata |
27388744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 28443218 - 28443177
Alignment:
| Q |
354 |
acaagtgaaagtgctggtcttatcatcatatgcatagctata |
395 |
Q |
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||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
28443218 |
acaagtgaacgtgctggtcttatcatcataggtatagctata |
28443177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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